Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96471 | Canola | nucleus | 98.46 | 98.05 |
| CDX68229 | Canola | nucleus | 88.53 | 90.04 |
| CDY11109 | Canola | nucleus | 86.99 | 87.61 |
| AT1G73360.1 | Thale cress | nucleus | 85.31 | 84.49 |
| Os06t0208100-00 | Rice | nucleus | 13.29 | 73.64 |
| CDX96744 | Canola | nucleus | 66.99 | 71.17 |
| CDY19185 | Canola | nucleus | 67.27 | 70.53 |
| CDY26205 | Canola | nucleus | 67.55 | 70.0 |
| CDY26204 | Canola | nucleus | 62.24 | 69.86 |
| CDX83884 | Canola | nucleus | 66.57 | 69.49 |
| CDY42097 | Canola | nucleus | 49.37 | 68.28 |
| KRH09477 | Soybean | nucleus | 66.01 | 65.74 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 65.17 | 65.63 |
| KRH38939 | Soybean | nucleus | 65.73 | 65.1 |
| Solyc03g098200.2.1 | Tomato | nucleus | 62.8 | 62.27 |
| PGSC0003DMT400069312 | Potato | nucleus | 62.24 | 62.24 |
| Solyc06g072310.2.1 | Tomato | nucleus | 61.96 | 61.79 |
| KRH60596 | Soybean | nucleus | 61.54 | 61.71 |
| KRH41898 | Soybean | nucleus | 61.82 | 61.3 |
| GSMUA_Achr10P... | Banana | nucleus | 55.66 | 55.98 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 52.17 | 54.45 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 52.03 | 54.31 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 45.73 | 54.23 |
| Zm00001d018225_P001 | Maize | nucleus | 52.31 | 54.05 |
| Zm00001d052133_P001 | Maize | nucleus | 52.59 | 53.87 |
| EES05874 | Sorghum | nucleus | 52.87 | 53.47 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 55.1 | 53.32 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 54.83 | 53.26 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 51.89 | 53.23 |
| Os06t0207966-00 | Rice | plastid | 19.44 | 52.85 |
| Zm00001d044973_P001 | Maize | nucleus | 50.49 | 52.39 |
| Zm00001d037140_P004 | Maize | nucleus | 50.07 | 52.11 |
| GSMUA_Achr10P... | Banana | nucleus | 49.65 | 52.05 |
| EER89393 | Sorghum | nucleus | 50.07 | 51.14 |
| CDX90879 | Canola | nucleus | 45.17 | 45.11 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 45.73 | 45.1 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 45.87 | 44.93 |
| CDY06167 | Canola | nucleus | 45.17 | 44.86 |
| CDY21319 | Canola | nucleus | 44.9 | 44.83 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 45.87 | 44.81 |
| CDX76399 | Canola | nucleus | 44.62 | 44.62 |
| CDY27417 | Canola | nucleus | 44.48 | 44.54 |
| CDX98703 | Canola | nucleus | 43.08 | 44.32 |
| CDX94054 | Canola | nucleus | 43.08 | 44.32 |
| CDY16639 | Canola | nucleus | 45.03 | 43.93 |
| CDY66622 | Canola | nucleus | 44.76 | 43.78 |
| CDX94586 | Canola | nucleus | 44.76 | 43.72 |
| CDY10041 | Canola | nucleus | 45.17 | 43.24 |
| CDX79091 | Canola | nucleus | 44.62 | 42.76 |
| CDY18903 | Canola | nucleus | 41.68 | 42.27 |
| CDY71572 | Canola | nucleus | 23.08 | 41.98 |
| CDX74762 | Canola | nucleus | 41.54 | 41.95 |
| CDY23096 | Canola | nucleus | 7.69 | 41.67 |
| CDY07201 | Canola | nucleus | 44.62 | 40.48 |
| CDY31916 | Canola | nucleus | 38.04 | 40.42 |
| CDX74347 | Canola | nucleus | 44.76 | 40.35 |
| CDY51143 | Canola | nucleus | 44.48 | 40.25 |
| CDX91894 | Canola | nucleus | 44.62 | 40.18 |
| CDY49515 | Canola | plasma membrane | 45.45 | 40.07 |
| CDY00515 | Canola | nucleus | 37.48 | 39.82 |
| CDX67855 | Canola | nucleus | 42.94 | 39.36 |
| CDY46842 | Canola | nucleus | 45.59 | 39.28 |
| CDY45684 | Canola | nucleus | 42.94 | 39.16 |
| CDY48272 | Canola | nucleus | 37.48 | 38.07 |
| CDY12213 | Canola | nucleus | 37.62 | 37.78 |
| CDX85461 | Canola | cytosol | 37.2 | 37.73 |
| CDX76559 | Canola | nucleus | 38.32 | 37.33 |
| CDY43458 | Canola | nucleus | 41.82 | 36.82 |
| CDY08866 | Canola | nucleus | 37.76 | 36.68 |
| CDY33492 | Canola | nucleus | 40.84 | 36.68 |
| CDX77711 | Canola | nucleus | 41.96 | 36.45 |
| CDY03177 | Canola | nucleus | 42.1 | 36.44 |
| CDY19129 | Canola | nucleus | 36.92 | 36.31 |
| CDY02713 | Canola | nucleus | 37.06 | 35.86 |
| CDY67945 | Canola | nucleus | 34.55 | 35.85 |
| CDY15339 | Canola | nucleus | 36.64 | 35.84 |
| CDY30748 | Canola | endoplasmic reticulum | 29.37 | 35.78 |
| CDY42301 | Canola | nucleus | 34.41 | 35.65 |
| CDY62389 | Canola | cytosol | 24.34 | 35.58 |
| CDY43137 | Canola | nucleus | 34.13 | 35.41 |
| CDY49937 | Canola | nucleus | 34.27 | 35.3 |
| CDY53691 | Canola | nucleus | 34.83 | 35.07 |
| CDY44946 | Canola | nucleus | 31.75 | 35.03 |
| CDY21211 | Canola | nucleus | 33.99 | 35.01 |
| CDY69499 | Canola | cytosol | 14.69 | 34.54 |
| CDY16938 | Canola | nucleus | 31.47 | 34.09 |
| CDX79408 | Canola | nucleus | 35.52 | 32.56 |
| CDX67929 | Canola | nucleus | 35.24 | 32.18 |
| CDX89415 | Canola | cytosol, mitochondrion | 7.97 | 32.02 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 12.17 | 30.42 |
| CDY39874 | Canola | plasma membrane | 8.11 | 30.21 |
| CDX89416 | Canola | nucleus | 24.62 | 27.12 |
| CDX94443 | Canola | cytosol | 23.36 | 26.59 |
| TraesCSU01G150000.1 | Wheat | nucleus | 7.69 | 25.23 |
| TraesCSU01G244000.1 | Wheat | nucleus | 6.43 | 22.33 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | GO:A0A078C9W2 | EnsemblPlants:CDX72984 | ProteinID:CDX72984 |
| ProteinID:CDX72984.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00103415001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 |
| InterPro:IPR023393 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | UniParc:UPI0004EDD84E | SEG:seg | : | : |
Description
BnaC06g34320D
Coordinates
chrLK031797:-:1493668..1497629
Molecular Weight (calculated)
78163.4 Da
IEP (calculated)
6.747
GRAVY (calculated)
-0.384
Length
715 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFVGGVGGS GSGGGDGGGG SGSQHHDGSE TDKKKKRYHR HTAQQIQRLE SSFKECPHPD DKQRNQLSRE LGLAPRQIKF WFQNRRTQLK AQHERADNNA
101: LKAENDKIRC ENIAIREAIK HAICPNCGSP PVNEDPYFDE HKLRIENAHL RDDLERMSTV ASKYMGRPIS SHLSTLHPLH ISPLDLSMTG PSLDFDLLPG
201: SSMHSQPNNL ATISDMDKPL MNDIALTAME ELLRLFNTNE PLWTRGDGGR EILDLGSYEN LFPRSGNRGK NHNVRTEASR SSGIVFMNAM TLVDMFMDGV
301: KWGELFPCIV ASSKTLAVVS SGMGGTHEGA LHLMYEEMAV LSPLVATREF CELRYCQMIE QGSWIVVNVS YHLPQFVSQS SHSYKFPSGC LIQDMPSGYS
401: KVTWVEHVET EEKEQTHELY REVIHKGIAF GAERWVTTLQ RMCERFASLL APSTSSRDLG GVIPSPEGKR SMMRLAHRMV SNYCLSVSRS NNTHSTVVAE
501: LNEVGVRVTA HKSPEPNGTI LCAATTFWLP NSPQSVFNFL KDERTRPQWD VLSNRNAVQE VAHIANGSHP GCCISVLRAS NASQSQSNNM LILQETSIDS
601: SGALVVYSPV DLPALNIAMS GDDTSYIPLL SSGFAISPDG NHSSSTTEQG GGASTSSGFG GGGSLITVGF QIMVSNLPSA KLNMESVETV NNLIGTTVHQ
701: IKTGLNNCPS GSTTA
101: LKAENDKIRC ENIAIREAIK HAICPNCGSP PVNEDPYFDE HKLRIENAHL RDDLERMSTV ASKYMGRPIS SHLSTLHPLH ISPLDLSMTG PSLDFDLLPG
201: SSMHSQPNNL ATISDMDKPL MNDIALTAME ELLRLFNTNE PLWTRGDGGR EILDLGSYEN LFPRSGNRGK NHNVRTEASR SSGIVFMNAM TLVDMFMDGV
301: KWGELFPCIV ASSKTLAVVS SGMGGTHEGA LHLMYEEMAV LSPLVATREF CELRYCQMIE QGSWIVVNVS YHLPQFVSQS SHSYKFPSGC LIQDMPSGYS
401: KVTWVEHVET EEKEQTHELY REVIHKGIAF GAERWVTTLQ RMCERFASLL APSTSSRDLG GVIPSPEGKR SMMRLAHRMV SNYCLSVSRS NNTHSTVVAE
501: LNEVGVRVTA HKSPEPNGTI LCAATTFWLP NSPQSVFNFL KDERTRPQWD VLSNRNAVQE VAHIANGSHP GCCISVLRAS NASQSQSNNM LILQETSIDS
601: SGALVVYSPV DLPALNIAMS GDDTSYIPLL SSGFAISPDG NHSSSTTEQG GGASTSSGFG GGGSLITVGF QIMVSNLPSA KLNMESVETV NNLIGTTVHQ
701: IKTGLNNCPS GSTTA
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.