Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021779.1-P | Field mustard | nucleus | 99.04 | 98.9 |
| CDY15339 | Canola | nucleus | 97.25 | 96.72 |
| CDY12213 | Canola | nucleus | 65.47 | 66.85 |
| CDY48272 | Canola | nucleus | 63.96 | 66.05 |
| CDY30748 | Canola | endoplasmic reticulum | 50.48 | 62.52 |
| AT2G32370.1 | Thale cress | nucleus | 55.16 | 55.31 |
| CDY06167 | Canola | nucleus | 49.93 | 50.42 |
| CDX90879 | Canola | nucleus | 48.14 | 48.88 |
| CDY10041 | Canola | nucleus | 50.21 | 48.86 |
| CDY21319 | Canola | nucleus | 48.01 | 48.74 |
| CDY16639 | Canola | nucleus | 48.28 | 47.89 |
| CDX76399 | Canola | nucleus | 46.91 | 47.69 |
| CDX94586 | Canola | nucleus | 47.87 | 47.54 |
| CDX98703 | Canola | nucleus | 45.39 | 47.48 |
| CDY71572 | Canola | nucleus | 25.58 | 47.33 |
| CDY27417 | Canola | nucleus | 46.35 | 47.2 |
| CDX94054 | Canola | nucleus | 45.12 | 47.19 |
| CDY66622 | Canola | nucleus | 47.32 | 47.06 |
| CDY23096 | Canola | nucleus | 8.39 | 46.21 |
| CDX79091 | Canola | nucleus | 46.63 | 45.44 |
| CDY49515 | Canola | plasma membrane | 50.21 | 45.01 |
| PGSC0003DMT400094124 | Potato | nucleus | 46.08 | 44.31 |
| CDY46842 | Canola | nucleus | 49.79 | 43.61 |
| PGSC0003DMT400048971 | Potato | nucleus | 33.7 | 43.13 |
| Solyc12g005830.1.1 | Tomato | nucleus | 44.29 | 42.88 |
| CDX74762 | Canola | nucleus | 38.65 | 39.69 |
| CDY18903 | Canola | nucleus | 38.38 | 39.57 |
| CDY42097 | Canola | nucleus | 27.65 | 38.88 |
| CDX96744 | Canola | nucleus | 35.49 | 38.34 |
| CDY26204 | Canola | nucleus | 33.56 | 38.3 |
| CDY00515 | Canola | nucleus | 35.21 | 38.04 |
| CDX67855 | Canola | nucleus | 40.72 | 37.95 |
| CDY45684 | Canola | nucleus | 40.58 | 37.63 |
| CDY31916 | Canola | nucleus | 34.8 | 37.59 |
| CDY19185 | Canola | nucleus | 35.08 | 37.39 |
| Solyc07g041850.1.1 | Tomato | nucleus | 34.94 | 37.35 |
| CDX68229 | Canola | nucleus | 36.04 | 37.27 |
| CDY51143 | Canola | nucleus | 40.44 | 37.22 |
| CDX96471 | Canola | nucleus | 36.73 | 37.19 |
| CDY26205 | Canola | nucleus | 35.21 | 37.1 |
| CDY07201 | Canola | nucleus | 40.17 | 37.06 |
| CDX72984 | Canola | nucleus | 36.31 | 36.92 |
| CDX91894 | Canola | nucleus | 40.03 | 36.65 |
| CDX83884 | Canola | nucleus | 34.53 | 36.64 |
| CDX74347 | Canola | nucleus | 39.89 | 36.57 |
| CDY11109 | Canola | nucleus | 35.35 | 36.2 |
| CDX67929 | Canola | nucleus | 36.59 | 33.97 |
| CDX79408 | Canola | nucleus | 36.31 | 33.85 |
| CDX89415 | Canola | cytosol, mitochondrion | 8.25 | 33.71 |
| PGSC0003DMT400033830 | Potato | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 16.09 | 33.24 |
| CDY43458 | Canola | nucleus | 35.63 | 31.9 |
| CDY03177 | Canola | nucleus | 35.76 | 31.48 |
| CDX76559 | Canola | nucleus | 31.36 | 31.06 |
| CDY08866 | Canola | nucleus | 31.36 | 30.98 |
| CDY39874 | Canola | plasma membrane | 8.12 | 30.73 |
| CDY33492 | Canola | nucleus | 33.56 | 30.65 |
| CDX77711 | Canola | nucleus | 34.53 | 30.5 |
| CDX85461 | Canola | cytosol | 29.02 | 29.93 |
| CDY43137 | Canola | nucleus | 27.65 | 29.17 |
| CDY44946 | Canola | nucleus | 26.0 | 29.17 |
| CDY67945 | Canola | nucleus | 27.51 | 29.03 |
| CDY16938 | Canola | nucleus | 26.0 | 28.64 |
| CDY53691 | Canola | nucleus | 27.92 | 28.59 |
| CDY42301 | Canola | nucleus | 27.1 | 28.55 |
| CDY02713 | Canola | nucleus | 28.75 | 28.28 |
| CDY49937 | Canola | nucleus | 26.55 | 27.81 |
| CDX89416 | Canola | nucleus | 24.48 | 27.43 |
| CDY62389 | Canola | cytosol | 18.43 | 27.4 |
| CDY69499 | Canola | cytosol | 11.42 | 27.3 |
| CDY21211 | Canola | nucleus | 26.0 | 27.23 |
| CDX94443 | Canola | cytosol | 23.25 | 26.91 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:A0A078G0Z4 | UniProt:A0A078G0Z4 | EnsemblPlants:CDY19129 | ProteinID:CDY19129 |
| ProteinID:CDY19129.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00006410001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 |
| PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF320 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom |
| UniParc:UPI0004EF2146 | SEG:seg | : | : | : | : |
Description
BnaA04g18690DBnaA04g18690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0Z4]
Coordinates
chrLK032092:+:411735..416335
Molecular Weight (calculated)
81068.6 Da
IEP (calculated)
6.593
GRAVY (calculated)
-0.423
Length
727 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQPNMVPVE MNNNVGDGDN NNNNNGNNIT TTNNDMNGGI VLGDEEIDSA NTSENQEDGS DHQDPARPSK RKRYHRHTKH QIQELENFFK ECPHPDDTQR
101: KELSRQLGLD HHQIKFWFQN KRTQIKNHQE RHENSQLRAE NDRLRAENHQ CRASIAKAIC HRCGGKTAIG EMSFEEHHLL LENTKLAEEI RQLSLVMPKC
201: TGKPVMNYTL TPPAPARPLE EIASNRREVY KSIGNLPGSA LRVKDVDKPL IIELAELAMK ELMAMARLDE PLWDIGANGT SLALNLNEYT RIFRNGLGPI
301: LNGLRTEASK ATSIAFMNHL DIVQSLMDVN LWSNMFARMV ARAMSHDAIL TGVQGNFDGA FHLMTAEYQV LSPVVSTREC YFVRHCKQQG DGIWAVVDVS
401: IDHLFPNLEL KCRRRPSGCL IQQIENGFCK VTWVEHVEVD DREVHPLYKS LISSGQALSA ERWVETLERQ CERLAYIMSP NVPSIEPDGL IMITNNAKQS
501: LLKIAERMTR SFLSGVATSN GDIWFGLSGN GGNTVRAMTR KSLNDPGRPV GVILYASTSF WLPVPPKTVF DFLRDANNRT NWDVITTGGE GLQLISQIGN
601: GRDSRNCVSL LRTPNTSQKK MMMIQETSTD PTASFVIYAP LDVTLTENVL MGGDPGNVSL LPMGFAILPD GTAQPGREGG SLVSTAFQVL AEKDPSTMLS
701: FSSLATTENL ILTTANKIRA YFSQQTV
101: KELSRQLGLD HHQIKFWFQN KRTQIKNHQE RHENSQLRAE NDRLRAENHQ CRASIAKAIC HRCGGKTAIG EMSFEEHHLL LENTKLAEEI RQLSLVMPKC
201: TGKPVMNYTL TPPAPARPLE EIASNRREVY KSIGNLPGSA LRVKDVDKPL IIELAELAMK ELMAMARLDE PLWDIGANGT SLALNLNEYT RIFRNGLGPI
301: LNGLRTEASK ATSIAFMNHL DIVQSLMDVN LWSNMFARMV ARAMSHDAIL TGVQGNFDGA FHLMTAEYQV LSPVVSTREC YFVRHCKQQG DGIWAVVDVS
401: IDHLFPNLEL KCRRRPSGCL IQQIENGFCK VTWVEHVEVD DREVHPLYKS LISSGQALSA ERWVETLERQ CERLAYIMSP NVPSIEPDGL IMITNNAKQS
501: LLKIAERMTR SFLSGVATSN GDIWFGLSGN GGNTVRAMTR KSLNDPGRPV GVILYASTSF WLPVPPKTVF DFLRDANNRT NWDVITTGGE GLQLISQIGN
601: GRDSRNCVSL LRTPNTSQKK MMMIQETSTD PTASFVIYAP LDVTLTENVL MGGDPGNVSL LPMGFAILPD GTAQPGREGG SLVSTAFQVL AEKDPSTMLS
701: FSSLATTENL ILTTANKIRA YFSQQTV
001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
Arabidopsis Description
HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.