Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25530.1 | CDX89415 | AT4G25530.1 | 17189287 |
| AT4G25530.1 | CDX89416 | AT4G25530.1 | 17189287 |
| AT4G25530.1 | CDX94443 | AT4G25530.1 | 17189287 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013898.1-P | Field mustard | nucleus | 88.38 | 89.09 |
| CDX89416 | Canola | nucleus | 91.88 | 88.91 |
| CDX89415 | Canola | cytosol, mitochondrion | 24.36 | 85.96 |
| AT4G25530.1 | Thale cress | nucleus | 48.73 | 44.61 |
| PGSC0003DMT400062470 | Potato | cytosol, nucleus, plastid | 16.4 | 33.88 |
| CDY31916 | Canola | nucleus | 34.24 | 31.95 |
| CDY00515 | Canola | nucleus | 34.08 | 31.8 |
| PGSC0003DMT400062468 | Potato | cytosol | 17.2 | 30.25 |
| CDY39874 | Canola | plasma membrane | 8.92 | 29.17 |
| PGSC0003DMT400028197 | Potato | cytosol | 15.45 | 29.13 |
| CDY18903 | Canola | nucleus | 31.21 | 27.8 |
| CDX74762 | Canola | nucleus | 31.21 | 27.68 |
| KRH35356 | Soybean | nucleus | 33.44 | 27.45 |
| KRG91457 | Soybean | nucleus | 33.76 | 27.28 |
| PGSC0003DMT400076898 | Potato | cytosol | 21.5 | 27.27 |
| CDY27417 | Canola | nucleus | 30.57 | 26.89 |
| CDY51143 | Canola | nucleus | 33.76 | 26.84 |
| CDX90879 | Canola | nucleus | 30.41 | 26.68 |
| CDX74347 | Canola | nucleus | 33.6 | 26.61 |
| CDX91894 | Canola | nucleus | 33.6 | 26.57 |
| CDY48272 | Canola | nucleus | 29.78 | 26.56 |
| CDY12213 | Canola | nucleus | 30.1 | 26.54 |
| CDY07201 | Canola | nucleus | 33.28 | 26.52 |
| CDX94054 | Canola | nucleus | 29.3 | 26.47 |
| CDX76399 | Canola | nucleus | 30.1 | 26.43 |
| CDY21319 | Canola | nucleus | 30.1 | 26.4 |
| CDX98703 | Canola | nucleus | 29.14 | 26.33 |
| KRH09109 | Soybean | plastid | 32.48 | 26.32 |
| CDY06167 | Canola | nucleus | 30.1 | 26.25 |
| CDY30748 | Canola | endoplasmic reticulum | 24.36 | 26.06 |
| CDY16639 | Canola | nucleus | 30.41 | 26.06 |
| CDX67855 | Canola | nucleus | 32.32 | 26.03 |
| CDX94586 | Canola | nucleus | 30.25 | 25.96 |
| CDY45684 | Canola | nucleus | 32.32 | 25.89 |
| CDY10041 | Canola | nucleus | 30.41 | 25.57 |
| VIT_16s0100g00670.t01 | Wine grape | nucleus | 31.85 | 25.54 |
| KRH38560 | Soybean | nucleus | 31.53 | 25.52 |
| PGSC0003DMT400042908 | Potato | nucleus | 20.22 | 25.5 |
| CDY62389 | Canola | cytosol | 19.75 | 25.36 |
| Solyc06g035940.2.1 | Tomato | nucleus | 27.23 | 25.3 |
| Solyc06g050160.2.1 | Tomato | nucleus | 26.27 | 25.27 |
| CDX96744 | Canola | nucleus | 26.75 | 24.96 |
| PGSC0003DMT400086035 | Potato | nucleus | 26.11 | 24.96 |
| CDY66622 | Canola | nucleus | 28.98 | 24.9 |
| CDX79091 | Canola | nucleus | 28.98 | 24.4 |
| CDY42097 | Canola | nucleus | 20.06 | 24.37 |
| Solyc03g026070.2.1 | Tomato | nucleus | 31.21 | 24.29 |
| PGSC0003DMT400037055 | Potato | nucleus | 31.37 | 24.26 |
| CDX83884 | Canola | nucleus | 26.43 | 24.23 |
| PGSC0003DMT400080861 | Potato | nucleus | 17.68 | 24.18 |
| CDX68229 | Canola | nucleus | 26.75 | 23.9 |
| CDY26204 | Canola | nucleus | 24.2 | 23.86 |
| CDY11109 | Canola | nucleus | 26.75 | 23.66 |
| CDX72984 | Canola | nucleus | 26.59 | 23.36 |
| CDX96471 | Canola | nucleus | 26.59 | 23.26 |
| CDY19129 | Canola | nucleus | 26.91 | 23.25 |
| CDY15339 | Canola | nucleus | 26.91 | 23.12 |
| CDY49515 | Canola | plasma membrane | 29.78 | 23.06 |
| CDY26205 | Canola | nucleus | 25.32 | 23.04 |
| CDY69499 | Canola | cytosol | 11.15 | 23.03 |
| CDY19185 | Canola | nucleus | 25.0 | 23.02 |
| PGSC0003DMT400028195 | Potato | nucleus | 13.85 | 22.83 |
| CDY46842 | Canola | nucleus | 29.94 | 22.65 |
| CDY71572 | Canola | nucleus | 14.17 | 22.65 |
| PGSC0003DMT400076902 | Potato | nucleus | 24.04 | 22.54 |
| CDX76559 | Canola | nucleus | 25.96 | 22.21 |
| CDY08866 | Canola | nucleus | 25.96 | 22.15 |
| CDY43137 | Canola | nucleus | 23.25 | 21.19 |
| CDY67945 | Canola | nucleus | 23.25 | 21.19 |
| CDY53691 | Canola | nucleus | 23.41 | 20.7 |
| CDY43458 | Canola | nucleus | 26.75 | 20.69 |
| CDX77711 | Canola | nucleus | 27.07 | 20.66 |
| CDY03177 | Canola | nucleus | 26.91 | 20.46 |
| CDY42301 | Canola | nucleus | 22.29 | 20.29 |
| CDX85461 | Canola | cytosol | 22.77 | 20.28 |
| CDX79408 | Canola | nucleus | 25.16 | 20.26 |
| CDX67929 | Canola | nucleus | 25.16 | 20.18 |
| CDY44946 | Canola | nucleus | 20.7 | 20.06 |
| CDY33492 | Canola | nucleus | 25.16 | 19.85 |
| CDY49937 | Canola | nucleus | 21.82 | 19.74 |
| CDY21211 | Canola | nucleus | 21.82 | 19.74 |
| CDY02713 | Canola | nucleus | 22.93 | 19.49 |
| PGSC0003DMT400092271 | Potato | nucleus | 8.12 | 19.25 |
| CDY16938 | Canola | nucleus | 19.75 | 18.79 |
| CDY23096 | Canola | nucleus | 3.5 | 16.67 |
Protein Annotations
| EnsemblPlants:CDX94443 | EnsemblPlantsGene:GSBRNA2T00157589001 | GO:A0A078E4T2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 |
| InterPro:IPR002913 | InterPro:START_lipid-bd_dom | ncoils:Coil | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF520 | PFAM:PF01852 |
| PFscan:PS50848 | ProteinID:CDX94443 | ProteinID:CDX94443.1 | SEG:seg | SMART:SM00234 | SUPFAM:SSF55961 |
| UniParc:UPI0004EEBD8C | MapMan:15.5.3.3 | : | : | : | : |
Description
BnaC01g17410D
Coordinates
chrLK031881:-:1174046..1176733
Molecular Weight (calculated)
69812.0 Da
IEP (calculated)
4.559
GRAVY (calculated)
-0.274
Length
628 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGQEDDYDD AYIYISSPSF MGIAEDDEIN DIMGAASGAG DHDRGNTIRN IMPIPQQIQE PENIYQECPH PMGTQARVDD IQNAPVERDS FTNDLLASLS
101: SPLGNALAAY DSFVDDDFLD IPAPPSSRTL MLNPGSDLLT KLGPMINDRS TLTVNPHDTQ PGSDTPLNKV DSGGKTLPIN IKSLLELADI AMNELIMLGE
201: VNTPSWIIDS SSNRVTLDYQ EYKSFFKNGF EKPPGYVIEA SRETATVHME SLALVKTFTA DNWINVFAPI VPVTSIHNLI PKGSGGPRSG SLRLITAEFQ
301: VISPLVPKRQ VKFLRYCKML RVGFWVVVDF TPRQENLNFS PDDGSYRLPS GVIIEDCGNG YSEVKWIEQI EYDESLIPQF PELLISSRIG LGAKRWLTTL
401: QRHCENISTL ASINLDEIYP GLSSKVATEI VKLAQRMTIN YYLCITATPA SIWKSNDSES ARQDIRVMIR KNKLSKKTTF DFLINPSFRN QWDILAIDVT
501: TSIEEKIKIQ KSRFHRNEVS LLQIEPGNSV LQETWNDASG ALLVYAPVDM EKILASENSD SVQILPSGFS ILPDGGGETD PNRSRVGCLL TLGYQMLHSV
601: KPGEDVDQDF VKKVELLMDR TMGKIKSA
101: SPLGNALAAY DSFVDDDFLD IPAPPSSRTL MLNPGSDLLT KLGPMINDRS TLTVNPHDTQ PGSDTPLNKV DSGGKTLPIN IKSLLELADI AMNELIMLGE
201: VNTPSWIIDS SSNRVTLDYQ EYKSFFKNGF EKPPGYVIEA SRETATVHME SLALVKTFTA DNWINVFAPI VPVTSIHNLI PKGSGGPRSG SLRLITAEFQ
301: VISPLVPKRQ VKFLRYCKML RVGFWVVVDF TPRQENLNFS PDDGSYRLPS GVIIEDCGNG YSEVKWIEQI EYDESLIPQF PELLISSRIG LGAKRWLTTL
401: QRHCENISTL ASINLDEIYP GLSSKVATEI VKLAQRMTIN YYLCITATPA SIWKSNDSES ARQDIRVMIR KNKLSKKTTF DFLINPSFRN QWDILAIDVT
501: TSIEEKIKIQ KSRFHRNEVS LLQIEPGNSV LQETWNDASG ALLVYAPVDM EKILASENSD SVQILPSGFS ILPDGGGETD PNRSRVGCLL TLGYQMLHSV
601: KPGEDVDQDF VKKVELLMDR TMGKIKSA
001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
Arabidopsis Description
HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.