Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89415 | Canola | cytosol, mitochondrion | 14.43 | 55.62 |
| Bra013898.1-P | Field mustard | nucleus | 45.63 | 50.24 |
| CDX89416 | Canola | nucleus | 47.23 | 49.92 |
| CDX94443 | Canola | cytosol | 44.61 | 48.73 |
| AT5G52170.2 | Thale cress | nucleus | 40.67 | 40.61 |
| KRH35356 | Soybean | nucleus | 40.52 | 36.34 |
| AT4G00730.1 | Thale cress | nucleus | 41.84 | 35.79 |
| KRG91457 | Soybean | nucleus | 40.52 | 35.78 |
| KRH09109 | Soybean | plastid | 38.48 | 34.06 |
| AT4G04890.1 | Thale cress | nucleus | 36.88 | 34.05 |
| AT1G05230.5 | Thale cress | nucleus | 35.71 | 33.98 |
| VIT_16s0100g00670.t01 | Wine grape | nucleus | 38.78 | 33.97 |
| KRH38560 | Soybean | nucleus | 37.76 | 33.38 |
| AT3G61150.1 | Thale cress | nucleus | 39.07 | 33.17 |
| AT4G21750.3 | Thale cress | nucleus | 36.59 | 32.94 |
| AT1G17920.1 | Thale cress | nucleus | 31.63 | 31.59 |
| AT1G73360.1 | Thale cress | nucleus | 33.09 | 31.44 |
| AT2G32370.1 | Thale cress | nucleus | 30.76 | 29.1 |
| AT3G03260.1 | Thale cress | nucleus | 28.86 | 28.33 |
| AT4G17710.1 | Thale cress | nucleus | 29.01 | 28.07 |
| AT1G79840.2 | Thale cress | nucleus, plastid | 31.34 | 27.71 |
| AT5G17320.1 | Thale cress | nucleus | 28.13 | 26.88 |
| AT5G46880.3 | Thale cress | nucleus | 32.36 | 26.88 |
| AT1G34650.1 | Thale cress | nucleus | 26.38 | 25.57 |
| AT5G07260.1 | Thale cress | cytosol | 18.08 | 22.92 |
| AT4G26920.1 | Thale cress | cytosol, plasma membrane, plastid | 13.12 | 19.52 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | EntrezGene:828658 | ProteinID:AAG09302.1 | ProteinID:AEE85074.1 | EMBL:AF243535 |
| ArrayExpress:AT4G25530 | EnsemblPlantsGene:AT4G25530 | RefSeq:AT4G25530 | TAIR:AT4G25530 | RefSeq:AT4G25530-TAIR-G | EnsemblPlants:AT4G25530.1 |
| TAIR:AT4G25530.1 | Unigene:At.2139 | UniProt:B5BPE6 | ProteinID:BAG68818.1 | ProteinID:BAG68820.1 | ProteinID:BAG68824.1 |
| ProteinID:BAG68828.1 | ProteinID:CAA18173.1 | ProteinID:CAB81363.1 | ncoils:Coil | Symbol:FWA | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006349 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009911 | GO:GO:0009987 | GO:GO:0031047 |
| GO:GO:0040029 | GO:GO:0042803 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 |
| RefSeq:NP_567722.1 | PFAM:PF00046 | PFAM:PF01852 | PO:PO:0001185 | PO:PO:0009009 | PO:PO:0009089 |
| PO:PO:0020090 | PO:PO:0025281 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF496 |
| UniProt:Q9FVI6 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom |
| UniParc:UPI0000162B1A | SEG:seg | : | : | : | : |
Description
HDG6Homeodomain-containing transcription factor FWA [Source:UniProtKB/TrEMBL;Acc:B5BPE6]
Coordinates
chr4:+:13038360..13042464
Molecular Weight (calculated)
76257.3 Da
IEP (calculated)
7.388
GRAVY (calculated)
-0.315
Length
686 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGQGDLDAV GNIPKPGEAE GDEIDMINDM SGVNDQDGGR MRRTHRRTAY QTQELENFYM ENPHPTEEQR YELGQRLNMG VNQVKNWFQN KRNLEKINND
101: HLENVTLREE HDRLLATQDQ LRSAMLRSLC NICGKATNCG DTEYEVQKLM AENANLEREI DQFNSRYLSH PKQRMVSTSE QAPSSSSNPG INATPVLDFS
201: GGTRTSEKET SIFLNLAITA LRELITLGEV DCPFWMIDPI VRSKGVSKIY EKYRSSFNNV TKPPGQIVEA SRAKGLVPMT CVTLVKTLMD TGKWVNVFAP
301: IVPVASTHKV LSTGSGGTKS GSLQQIQAEF QVISPLVPKR KVTFIRYCKE IRQGLWVVVD VTPTQNPTLL PYGCSKRLPS GLIIDDLSNG YSQVTWIEQA
401: EYNESHIHQL YQPLIGYGIG LGAKRWLATL QRHCESLSTL SSTNLTEISP GLSAKGATEI VKLAQRMTLN YYRGITSPSV DKWQKIQVEN VAQNMSFMIR
501: KNVNEPGELT GIVLSASTSV WLPVNQHTLF AFISHLSFRH EWDILTNDTT MEETIRIQKA KRHGNIISLL KIVNNGMLVL QEIWNDASGA MVVYAPVETN
601: SIELVKRGEN SDSVKFLPSG FSIVPDGVNG SYHRGNTGGG CLLTFGLQIL VGINPTAALI QGTVKSVETL MAHTIVKIKS ALDLQT
101: HLENVTLREE HDRLLATQDQ LRSAMLRSLC NICGKATNCG DTEYEVQKLM AENANLEREI DQFNSRYLSH PKQRMVSTSE QAPSSSSNPG INATPVLDFS
201: GGTRTSEKET SIFLNLAITA LRELITLGEV DCPFWMIDPI VRSKGVSKIY EKYRSSFNNV TKPPGQIVEA SRAKGLVPMT CVTLVKTLMD TGKWVNVFAP
301: IVPVASTHKV LSTGSGGTKS GSLQQIQAEF QVISPLVPKR KVTFIRYCKE IRQGLWVVVD VTPTQNPTLL PYGCSKRLPS GLIIDDLSNG YSQVTWIEQA
401: EYNESHIHQL YQPLIGYGIG LGAKRWLATL QRHCESLSTL SSTNLTEISP GLSAKGATEI VKLAQRMTLN YYRGITSPSV DKWQKIQVEN VAQNMSFMIR
501: KNVNEPGELT GIVLSASTSV WLPVNQHTLF AFISHLSFRH EWDILTNDTT MEETIRIQKA KRHGNIISLL KIVNNGMLVL QEIWNDASGA MVVYAPVETN
601: SIELVKRGEN SDSVKFLPSG FSIVPDGVNG SYHRGNTGGG CLLTFGLQIL VGINPTAALI QGTVKSVETL MAHTIVKIKS ALDLQT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.