Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G07260.1 | Thale cress | cytosol | 38.83 | 33.09 |
| PGSC0003DMT400028197 | Potato | cytosol | 14.75 | 20.42 |
| PGSC0003DMT400076898 | Potato | cytosol | 20.39 | 18.99 |
| AT1G17920.1 | Thale cress | nucleus | 24.08 | 16.16 |
| PGSC0003DMT400062470 | Potato | cytosol, nucleus, plastid | 10.63 | 16.12 |
| AT1G05230.5 | Thale cress | nucleus | 24.95 | 15.95 |
| AT4G04890.1 | Thale cress | nucleus | 24.51 | 15.21 |
| AT4G21750.3 | Thale cress | nucleus | 24.73 | 14.96 |
| PGSC0003DMT400062468 | Potato | cytosol | 11.5 | 14.85 |
| PGSC0003DMT400042908 | Potato | nucleus | 15.84 | 14.66 |
| AT5G52170.2 | Thale cress | nucleus | 21.69 | 14.56 |
| Solyc06g035940.2.1 | Tomato | nucleus | 21.26 | 14.5 |
| AT1G73360.1 | Thale cress | nucleus | 22.34 | 14.27 |
| AT3G61150.1 | Thale cress | nucleus | 24.73 | 14.11 |
| AT3G03260.1 | Thale cress | nucleus | 21.26 | 14.02 |
| AT4G00730.1 | Thale cress | nucleus | 24.3 | 13.97 |
| Solyc06g050160.2.1 | Tomato | nucleus | 19.31 | 13.63 |
| PGSC0003DMT400037055 | Potato | nucleus | 23.86 | 13.55 |
| PGSC0003DMT400086035 | Potato | nucleus | 19.31 | 13.55 |
| PGSC0003DMT400080861 | Potato | nucleus | 13.45 | 13.51 |
| AT2G32370.1 | Thale cress | nucleus | 21.04 | 13.38 |
| AT4G25530.1 | Thale cress | nucleus | 19.52 | 13.12 |
| Solyc03g026070.2.1 | Tomato | nucleus | 22.78 | 13.01 |
| AT4G17710.1 | Thale cress | nucleus | 19.96 | 12.98 |
| AT5G46880.3 | Thale cress | nucleus | 23.21 | 12.95 |
| AT1G34650.1 | Thale cress | nucleus | 19.74 | 12.85 |
| AT1G79840.2 | Thale cress | nucleus, plastid | 20.82 | 12.37 |
| PGSC0003DMT400028195 | Potato | nucleus | 9.76 | 11.81 |
| PGSC0003DMT400076902 | Potato | nucleus | 16.92 | 11.64 |
| AT5G17320.1 | Thale cress | nucleus | 18.0 | 11.56 |
| PGSC0003DMT400092271 | Potato | nucleus | 6.07 | 10.57 |
| VIT_13s0067g01580.t01 | Wine grape | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.3.3 | EntrezGene:828799 | ProteinID:AEE85270.1 | ArrayExpress:AT4G26920 | EnsemblPlantsGene:AT4G26920 | RefSeq:AT4G26920 |
| TAIR:AT4G26920 | RefSeq:AT4G26920-TAIR-G | EnsemblPlants:AT4G26920.1 | TAIR:AT4G26920.1 | Unigene:At.54524 | ProteinID:CAB79547.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0008289 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR002913 | RefSeq:NP_194422.1 | PFAM:PF01852 |
| PO:PO:0001054 | PO:PO:0007098 | PO:PO:0007115 | PO:PO:0009025 | PO:PO:0020030 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF348 | UniProt:Q9M0J8 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | TMHMM:TMhelix |
| UniParc:UPI00000A33F5 | : | : | : | : | : |
Description
Putative homeodomain protein [Source:UniProtKB/TrEMBL;Acc:Q9M0J8]
Coordinates
chr4:+:13525031..13527172
Molecular Weight (calculated)
52339.1 Da
IEP (calculated)
7.580
GRAVY (calculated)
-0.010
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQKTLTSE DGNINQTEIL SEANELQFEN AVSRSDNETL NAFTMLLDFW RNQFPNVSSY LLNLWVVLAC IVNEIIALAT LESPLWRRSQ REEMLTLNEY
101: YSRFFPWYAK NVPRFVHEAS RASEVIHVDA SWLLTKLKNP MRWVTIFPSL VGNVSIESSN DDVRMIIDME FLTLITPVIP TRKVKVLRYC HRIANDTWII
201: ADISMYLSSY SDDLRPEFLR FPSGFIIKHV ARIFRVTNSA GKNNLLQASK RLVHIFCSGT CGVIGNRGRW LGAGRRFDVR VSSLESRDMI RHPYGIISAS
301: GLTKIHAKPE ILFPLIYGVK KLEIHNHLRL SGNDLKQVLR ITRDDITSRN DVSLFSFRLN NSTEVFLLQE AYNEASSSMV IHSILDVSSL AKIINGDRSY
401: SFTYPCGFTI MPGQNSGDED AGCVVSVGFL TIATEEIVAN TLVSDVERGI YLLLLQISRM S
101: YSRFFPWYAK NVPRFVHEAS RASEVIHVDA SWLLTKLKNP MRWVTIFPSL VGNVSIESSN DDVRMIIDME FLTLITPVIP TRKVKVLRYC HRIANDTWII
201: ADISMYLSSY SDDLRPEFLR FPSGFIIKHV ARIFRVTNSA GKNNLLQASK RLVHIFCSGT CGVIGNRGRW LGAGRRFDVR VSSLESRDMI RHPYGIISAS
301: GLTKIHAKPE ILFPLIYGVK KLEIHNHLRL SGNDLKQVLR ITRDDITSRN DVSLFSFRLN NSTEVFLLQE AYNEASSSMV IHSILDVSSL AKIINGDRSY
401: SFTYPCGFTI MPGQNSGDED AGCVVSVGFL TIATEEIVAN TLVSDVERGI YLLLLQISRM S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.