Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G17320.1 | Thale cress | nucleus | 68.64 | 67.69 |
| CDY62389 | Canola | cytosol | 45.2 | 65.44 |
| CDY69499 | Canola | cytosol | 27.97 | 65.13 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 63.14 | 61.83 |
| Bra023611.1-P | Field mustard | nucleus | 61.3 | 61.56 |
| CDX85461 | Canola | cytosol | 61.3 | 61.56 |
| CDY53691 | Canola | nucleus | 60.45 | 60.28 |
| Bra003213.1-P | Field mustard | nucleus | 60.31 | 60.14 |
| CDY02713 | Canola | nucleus | 61.3 | 58.73 |
| CDY16938 | Canola | nucleus | 53.95 | 57.88 |
| Os06t0208100-00 | Rice | nucleus | 9.75 | 53.49 |
| AT3G03260.1 | Thale cress | nucleus | 47.03 | 47.64 |
| Solyc09g057530.1.1 | Tomato | cytosol | 8.19 | 42.34 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 42.09 | 41.74 |
| Zm00001d018225_P001 | Maize | nucleus | 38.56 | 39.45 |
| Solyc09g066070.2.1 | Tomato | cytosol | 24.01 | 39.44 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 37.85 | 39.12 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 37.71 | 38.98 |
| PGSC0003DMT400038820 | Potato | extracellular | 19.92 | 38.74 |
| Zm00001d052133_P001 | Maize | nucleus | 37.99 | 38.54 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 37.71 | 38.31 |
| EES05874 | Sorghum | nucleus | 38.14 | 38.19 |
| PGSC0003DMT400051268 | Potato | cytosol | 26.69 | 37.88 |
| Zm00001d037140_P004 | Maize | nucleus | 36.58 | 37.7 |
| PGSC0003DMT400085057 | Potato | cytosol | 25.42 | 37.66 |
| Solyc09g057540.2.1 | Tomato | cytosol | 26.41 | 37.63 |
| KRH11810 | Soybean | nucleus | 37.85 | 37.59 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 31.92 | 37.48 |
| Zm00001d044973_P001 | Maize | nucleus | 36.3 | 37.3 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 19.35 | 37.23 |
| Solyc09g060130.1.1 | Tomato | cytosol | 23.31 | 37.16 |
| GSMUA_Achr10P... | Banana | nucleus | 37.29 | 37.13 |
| EER89393 | Sorghum | nucleus | 36.44 | 36.86 |
| KRH36827 | Soybean | nucleus | 36.86 | 36.81 |
| GSMUA_Achr10P... | Banana | nucleus | 35.31 | 36.66 |
| Solyc10g018030.1.1 | Tomato | cytosol | 21.33 | 36.56 |
| AT1G17920.1 | Thale cress | nucleus | 35.45 | 36.54 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 37.99 | 36.4 |
| Solyc04g025490.1.1 | Tomato | cytosol | 12.43 | 36.36 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 34.89 | 36.27 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 37.43 | 36.01 |
| Solyc11g022420.1.1 | Tomato | cytosol | 24.01 | 35.49 |
| Solyc09g060170.1.1 | Tomato | cytosol | 17.23 | 35.47 |
| Solyc11g011940.1.1 | Tomato | nucleus | 35.88 | 35.43 |
| Solyc09g066050.2.1 | Tomato | cytosol | 27.54 | 35.26 |
| Solyc08g062510.2.1 | Tomato | nucleus | 32.49 | 35.22 |
| Solyc05g015030.1.1 | Tomato | cytosol | 23.45 | 35.02 |
| Os06t0207966-00 | Rice | plastid | 12.99 | 34.98 |
| PGSC0003DMT400051266 | Potato | cytosol | 19.21 | 34.96 |
| Solyc07g026560.1.1 | Tomato | cytosol | 23.31 | 34.88 |
| AT1G73360.1 | Thale cress | nucleus | 35.45 | 34.76 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 35.03 | 34.21 |
| KRH36826 | Soybean | nucleus | 34.18 | 33.94 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 34.89 | 33.84 |
| Solyc09g066030.1.1 | Tomato | nucleus | 34.46 | 33.75 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 34.75 | 33.61 |
| Solyc10g018020.1.1 | Tomato | extracellular | 15.54 | 32.74 |
| Solyc08g062520.2.1 | Tomato | cytosol | 23.45 | 32.49 |
| PGSC0003DMT400036411 | Potato | nucleus | 24.01 | 32.38 |
| AT1G05230.5 | Thale cress | nucleus | 32.77 | 32.18 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 31.64 | 32.05 |
| Solyc07g026570.1.1 | Tomato | nucleus | 6.36 | 31.91 |
| Solyc07g037910.1.1 | Tomato | cytosol | 9.46 | 31.75 |
| AT4G04890.1 | Thale cress | nucleus | 33.19 | 31.63 |
| Solyc04g025480.1.1 | Tomato | cytosol | 28.81 | 31.14 |
| AT4G21750.3 | Thale cress | nucleus | 33.47 | 31.1 |
| KRH42428 | Soybean | nucleus | 32.77 | 30.65 |
| AT5G52170.2 | Thale cress | nucleus | 28.25 | 29.11 |
| AT2G32370.1 | Thale cress | nucleus | 29.24 | 28.55 |
| AT4G00730.1 | Thale cress | nucleus | 32.2 | 28.43 |
| AT3G61150.1 | Thale cress | nucleus | 31.5 | 27.6 |
| KRH42429 | Soybean | cytosol | 28.39 | 27.53 |
| AT1G79840.2 | Thale cress | nucleus, plastid | 30.08 | 27.45 |
| AT4G25530.1 | Thale cress | nucleus | 25.57 | 26.38 |
| AT5G46880.3 | Thale cress | nucleus | 29.24 | 25.06 |
| AT4G17710.1 | Thale cress | nucleus | 24.58 | 24.54 |
| AT5G07260.1 | Thale cress | cytosol | 16.67 | 21.81 |
| TraesCSU01G150000.1 | Wheat | nucleus | 6.64 | 21.56 |
| AT4G26920.1 | Thale cress | cytosol, plasma membrane, plastid | 12.85 | 19.74 |
| TraesCSU01G244000.1 | Wheat | nucleus | 5.51 | 18.93 |
| HORVU3Hr1G022170.1 | Barley | cytosol | 2.68 | 15.97 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | EntrezGene:840369 | ProteinID:AAD46012.1 | ProteinID:AAF79277.1 |
| ProteinID:AEE31732.1 | ArrayExpress:AT1G34650 | EnsemblPlantsGene:AT1G34650 | RefSeq:AT1G34650 | TAIR:AT1G34650 | RefSeq:AT1G34650-TAIR-G |
| EnsemblPlants:AT1G34650.1 | TAIR:AT1G34650.1 | Unigene:At.51941 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009987 | Symbol:HDG10 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR002913 | InterPro:IPR023393 | RefSeq:NP_174724.1 | PFAM:PF00046 | PFAM:PF01852 | PO:PO:0009066 |
| PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF504 | UniProt:Q9S9Z0 | SMART:SM00234 |
| SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | UniParc:UPI00000A212D |
| SEG:seg | : | : | : | : | : |
Description
HDG10Homeobox-leucine zipper protein HDG10 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9Z0]
Coordinates
chr1:+:12692995..12697834
Molecular Weight (calculated)
80062.9 Da
IEP (calculated)
8.065
GRAVY (calculated)
-0.397
Length
708 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSHNDSSS DEEGIDSNNR RHHSNHQVQR LEAFFHECPH PDDSQRRQLG NELNLKHKQI KFWFQNRRTQ ARIHNEKADN IALRVENMKI RCVNEAMEKA
101: LETVLCPPCG GPHGKEEQLC NLQKLRTKNV ILKTEYERLS SYLTKHGGYS IPSVDALPDL HGPSTYGSTS NNRPASYGSS SNHLPQQSSL LRRPFTRELI
201: NTTPLPKPVL LQHFQQLSQL EKNRMFEIAK NAVAEVMSLI QMEHSMWIKS TIDGRAIIDP GNYKRYFTKN SHLKSRSALQ SHHESSMEVV VVQMDARNLV
301: DMFLNTEKWA RLFPTIVTEA KTIHVLDSMD HPRQTFSRVV YEQLHILSPL VLPREFIILR TCQQMKEDLW LIADVSCYLQ NVEFESTAPI CTKRPSGVLI
401: QALPHGRSKV TWIEHVEVTD KVWPHQLYRD LLYGGFGYGA RRWTATLQRM CERLSLYSMT DFPPTDYPGV VKTIEGRRSV MSLGERMLKN FAWIMKMSDK
501: LDLPQQSGAN NSGVRISVRT NTEAGQPPGL IVCAGSSLSL PLPPLQVYDF LRNLEVRHQW DVHCQGNPVT EAARFVTGPD QKNNVTFLQP SSVGEYKLMI
601: LQDGFIDALG GMVVYAPMNL NTAYSAISGQ VDPSTIPILP SGFIISRDSH PSSSEVDGGS MTLLTLAFQI FVTGPSYYTD LNLKDSATTV NTLVSSAVQR
701: IKAMLNCE
101: LETVLCPPCG GPHGKEEQLC NLQKLRTKNV ILKTEYERLS SYLTKHGGYS IPSVDALPDL HGPSTYGSTS NNRPASYGSS SNHLPQQSSL LRRPFTRELI
201: NTTPLPKPVL LQHFQQLSQL EKNRMFEIAK NAVAEVMSLI QMEHSMWIKS TIDGRAIIDP GNYKRYFTKN SHLKSRSALQ SHHESSMEVV VVQMDARNLV
301: DMFLNTEKWA RLFPTIVTEA KTIHVLDSMD HPRQTFSRVV YEQLHILSPL VLPREFIILR TCQQMKEDLW LIADVSCYLQ NVEFESTAPI CTKRPSGVLI
401: QALPHGRSKV TWIEHVEVTD KVWPHQLYRD LLYGGFGYGA RRWTATLQRM CERLSLYSMT DFPPTDYPGV VKTIEGRRSV MSLGERMLKN FAWIMKMSDK
501: LDLPQQSGAN NSGVRISVRT NTEAGQPPGL IVCAGSSLSL PLPPLQVYDF LRNLEVRHQW DVHCQGNPVT EAARFVTGPD QKNNVTFLQP SSVGEYKLMI
601: LQDGFIDALG GMVVYAPMNL NTAYSAISGQ VDPSTIPILP SGFIISRDSH PSSSEVDGGS MTLLTLAFQI FVTGPSYYTD LNLKDSATTV NTLVSSAVQR
701: IKAMLNCE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.