Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004894_P001 | |
| Zm00001d030069_P004 | |
| Zm00001d052595_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73360.1 | Zm00001d030069_P004 | AT4G17710.1 | 21798944 |
| AT1G73360.1 | Zm00001d004894_P001 | AT5G38420.1 | 21798944 |
| AT1G73360.1 | Zm00001d052595_P001 | AT5G38420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d052133_P001 | Maize | nucleus | 94.08 | 93.27 |
| EES05874 | Sorghum | nucleus | 94.94 | 92.93 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 84.39 | 85.26 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 84.39 | 85.26 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 84.39 | 83.79 |
| HORVU6Hr1G079410.6 | Barley | nucleus | 84.83 | 80.97 |
| Zm00001d044973_P001 | Maize | nucleus | 78.03 | 78.37 |
| Zm00001d037140_P004 | Maize | nucleus | 77.17 | 77.73 |
| GSMUA_Achr10P... | Banana | nucleus | 66.76 | 64.98 |
| KRH09477 | Soybean | nucleus | 65.9 | 63.51 |
| KRH38939 | Soybean | nucleus | 66.19 | 63.43 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 64.74 | 63.1 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 66.33 | 62.11 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 65.75 | 61.82 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 53.61 | 61.53 |
| KRH60596 | Soybean | nucleus | 61.71 | 59.89 |
| GSMUA_Achr10P... | Banana | nucleus | 58.53 | 59.38 |
| KRH41898 | Soybean | nucleus | 61.85 | 59.36 |
| Solyc03g098200.2.1 | Tomato | nucleus | 60.55 | 58.11 |
| PGSC0003DMT400069312 | Potato | nucleus | 59.39 | 57.48 |
| Solyc06g072310.2.1 | Tomato | nucleus | 58.96 | 56.9 |
| CDX96744 | Canola | nucleus | 54.05 | 55.57 |
| CDX83884 | Canola | nucleus | 54.19 | 54.74 |
| AT1G17920.1 | Thale cress | nucleus | 54.34 | 54.73 |
| Bra016578.1-P | Field mustard | nucleus | 53.61 | 54.24 |
| AT1G73360.1 | Thale cress | nucleus | 56.5 | 54.16 |
| CDX68229 | Canola | nucleus | 54.62 | 53.77 |
| Bra003846.1-P | Field mustard | nucleus | 54.34 | 53.33 |
| CDY11109 | Canola | nucleus | 54.05 | 52.68 |
| CDX96471 | Canola | nucleus | 54.62 | 52.65 |
| CDY19185 | Canola | nucleus | 51.88 | 52.64 |
| Bra015996.1-P | Field mustard | nucleus | 54.34 | 52.44 |
| CDY26204 | Canola | nucleus | 48.27 | 52.43 |
| CDY42097 | Canola | nucleus | 39.16 | 52.42 |
| CDX72984 | Canola | nucleus | 54.05 | 52.31 |
| CDY26205 | Canola | nucleus | 52.02 | 52.17 |
| Bra025938.1-P | Field mustard | nucleus | 52.31 | 52.16 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 52.89 | 51.26 |
| Solyc09g057530.1.1 | Tomato | cytosol | 8.67 | 43.8 |
| Zm00001d049443_P005 | Maize | nucleus | 49.13 | 42.71 |
| Zm00001d002234_P003 | Maize | nucleus | 48.99 | 42.7 |
| KRH11810 | Soybean | nucleus | 43.93 | 42.64 |
| KRH36827 | Soybean | nucleus | 43.64 | 42.6 |
| Zm00001d040090_P002 | Maize | nucleus | 48.99 | 42.22 |
| Zm00001d024701_P001 | Maize | nucleus | 48.41 | 42.03 |
| AT3G03260.1 | Thale cress | nucleus | 41.19 | 40.77 |
| Zm00001d026351_P003 | Maize | nucleus | 49.57 | 40.64 |
| Zm00001d000247_P001 | Maize | plasma membrane | 42.05 | 40.47 |
| CDX85461 | Canola | cytosol | 39.74 | 39.01 |
| Bra023611.1-P | Field mustard | nucleus | 39.6 | 38.87 |
| AT5G17320.1 | Thale cress | nucleus | 40.17 | 38.72 |
| Zm00001d026088_P002 | Maize | nucleus | 46.53 | 38.61 |
| Bra032003.1-P | Field mustard | nucleus | 38.44 | 38.61 |
| CDY53691 | Canola | nucleus | 39.6 | 38.59 |
| AT1G34650.1 | Thale cress | nucleus | 39.45 | 38.56 |
| Bra003213.1-P | Field mustard | nucleus | 39.45 | 38.45 |
| CDY62389 | Canola | cytosol | 27.17 | 38.45 |
| CDY42301 | Canola | nucleus | 38.29 | 38.41 |
| CDY43137 | Canola | nucleus | 38.15 | 38.32 |
| KRH36826 | Soybean | nucleus | 39.45 | 38.29 |
| CDY67945 | Canola | nucleus | 38.01 | 38.17 |
| Bra020066.1-P | Field mustard | nucleus | 37.57 | 38.12 |
| Solyc09g066070.2.1 | Tomato | cytosol | 23.7 | 38.05 |
| CDY49937 | Canola | nucleus | 37.57 | 37.46 |
| CDY02713 | Canola | nucleus | 39.74 | 37.21 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 38.87 | 37.21 |
| CDY44946 | Canola | nucleus | 34.83 | 37.19 |
| Zm00001d021236_P004 | Maize | nucleus | 48.41 | 37.1 |
| Solyc07g026570.1.1 | Tomato | nucleus | 7.51 | 36.88 |
| CDY21211 | Canola | nucleus | 36.85 | 36.74 |
| Bra021363.1-P | Field mustard | nucleus | 38.44 | 36.59 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 35.98 | 36.56 |
| Zm00001d030069_P004 | Maize | nucleus | 46.68 | 36.54 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 19.36 | 36.41 |
| CDY69499 | Canola | cytosol | 15.9 | 36.18 |
| Solyc11g011940.1.1 | Tomato | nucleus | 37.28 | 35.98 |
| CDY16938 | Canola | nucleus | 34.1 | 35.76 |
| PGSC0003DMT400051268 | Potato | cytosol | 25.72 | 35.67 |
| PGSC0003DMT400085057 | Potato | cytosol | 24.57 | 35.56 |
| Zm00001d040091_P001 | Maize | nucleus | 13.29 | 35.25 |
| Solyc09g060170.1.1 | Tomato | cytosol | 17.49 | 35.17 |
| Solyc10g018030.1.1 | Tomato | cytosol | 20.95 | 35.11 |
| Solyc10g018020.1.1 | Tomato | extracellular | 16.91 | 34.82 |
| Solyc08g062510.2.1 | Tomato | nucleus | 32.8 | 34.76 |
| Solyc09g060130.1.1 | Tomato | cytosol | 22.25 | 34.68 |
| Solyc09g066030.1.1 | Tomato | nucleus | 35.98 | 34.44 |
| Solyc09g057540.2.1 | Tomato | cytosol | 24.57 | 34.21 |
| KRH42428 | Soybean | nucleus | 37.14 | 33.95 |
| Solyc09g066050.2.1 | Tomato | cytosol | 27.02 | 33.82 |
| PGSC0003DMT400051266 | Potato | cytosol | 18.93 | 33.68 |
| Solyc05g015030.1.1 | Tomato | cytosol | 22.98 | 33.54 |
| PGSC0003DMT400038820 | Potato | extracellular | 17.63 | 33.52 |
| Solyc04g025490.1.1 | Tomato | cytosol | 11.42 | 32.64 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 32.95 | 32.62 |
| Solyc11g022420.1.1 | Tomato | cytosol | 22.25 | 32.15 |
| Solyc07g026560.1.1 | Tomato | cytosol | 21.68 | 31.71 |
| Solyc08g062520.2.1 | Tomato | cytosol | 23.41 | 31.7 |
| Zm00001d019477_P001 | Maize | nucleus | 33.67 | 31.66 |
| PGSC0003DMT400036411 | Potato | nucleus | 23.84 | 31.43 |
| Zm00001d004234_P001 | Maize | nucleus | 30.92 | 30.27 |
| Solyc04g025480.1.1 | Tomato | cytosol | 28.61 | 30.23 |
| KRH42429 | Soybean | cytosol | 31.5 | 29.86 |
| TraesCSU01G150000.1 | Wheat | nucleus | 9.1 | 28.9 |
| Solyc07g037910.1.1 | Tomato | cytosol | 8.38 | 27.49 |
| TraesCSU01G244000.1 | Wheat | nucleus | 7.66 | 25.73 |
| Zm00001d004230_P030 | Maize | nucleus | 29.91 | 25.43 |
| Zm00001d043231_P001 | Maize | nucleus | 28.9 | 25.25 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 10.12 | 24.48 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100502181 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | ProteinID:AQK75299.1 | ncoils:Coil |
| ProteinID:DAA34963.1 | UniProt:G2J5S8 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | InterPro:IPR023393 |
| PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf |
| InterPro:START_lipid-bd_dom | UniParc:UPI00022969F4 | EnsemblPlantsGene:Zm00001d018225 | EnsemblPlants:Zm00001d018225_P001 | EnsemblPlants:Zm00001d018225_T001 | SEG:seg |
Description
Homeobox-transcription factor 71Homeodomain leucine zipper family IV protein
Coordinates
chr5:+:216949284..216953293
Molecular Weight (calculated)
75817.9 Da
IEP (calculated)
6.586
GRAVY (calculated)
-0.205
Length
692 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFGDDVMDG GSDAQRRKKR YHRHTPRQIQ QLEAMFKECP HPDENQRMQL SRELGLEPRQ IKFWFQNRRT QMKAQHERQD NCFLRAENDK IRCENIAMQE
101: ALRNVICPTC GGPPVADDHF DEQKLRMENA RLKEELDRVS SLTSKYLGRP ITQLPSAQAL SMSSLDLSVG GLGGPSLDLD LLSGGSSGYP PFHLLPMAVS
201: EMERPMMAEM ATRAMDELIR MAQAGEHLWV KTGGREVLNV DTYDSIFAKP DGSFRGPDVH VEGSRETGLV FMSAIGLVDM FMDSSKWTEL FPAIVSKART
301: VDVLVNGMGG RSESLLLMYE ELHVMSPVVP TREFCFLRYC RQIEHGLWAI ADISVDQQQR DARFGAPPSR SCRLPSGCLI ADMADGSSKV TWVEHMEIED
401: RVPIHLLYRD LVLSGAAFGA HRWLAALQRA CERCACLATA GIMPHRDIAA AGVTPEGKRS MMKLSQRMVN SFCASLSASQ LHRWTTLSGP NDVGVRVMVH
501: RSTDPGQPSG VVLSAATSIW LPVPCDRAFA FVRDEHTRSQ WDVLSHGNPV QEVSRIPNGS HPGNCISLLR GLNASQNSML ILQESCTDAS GSLVVYAPID
601: IPAANVVMSG EDPSAIPLLP SGFSILPDGR PGASSSRAGQ APSAGSLVTV AFQILVSSLP SAKLNAESVA TVNSLISTTV EQIKAALNCA SH
101: ALRNVICPTC GGPPVADDHF DEQKLRMENA RLKEELDRVS SLTSKYLGRP ITQLPSAQAL SMSSLDLSVG GLGGPSLDLD LLSGGSSGYP PFHLLPMAVS
201: EMERPMMAEM ATRAMDELIR MAQAGEHLWV KTGGREVLNV DTYDSIFAKP DGSFRGPDVH VEGSRETGLV FMSAIGLVDM FMDSSKWTEL FPAIVSKART
301: VDVLVNGMGG RSESLLLMYE ELHVMSPVVP TREFCFLRYC RQIEHGLWAI ADISVDQQQR DARFGAPPSR SCRLPSGCLI ADMADGSSKV TWVEHMEIED
401: RVPIHLLYRD LVLSGAAFGA HRWLAALQRA CERCACLATA GIMPHRDIAA AGVTPEGKRS MMKLSQRMVN SFCASLSASQ LHRWTTLSGP NDVGVRVMVH
501: RSTDPGQPSG VVLSAATSIW LPVPCDRAFA FVRDEHTRSQ WDVLSHGNPV QEVSRIPNGS HPGNCISLLR GLNASQNSML ILQESCTDAS GSLVVYAPID
601: IPAANVVMSG EDPSAIPLLP SGFSILPDGR PGASSSRAGQ APSAGSLVTV AFQILVSSLP SAKLNAESVA TVNSLISTTV EQIKAALNCA SH
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.