Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g057530.1.1 | Tomato | cytosol | 26.91 | 84.67 |
| Solyc09g060170.1.1 | Tomato | cytosol | 64.5 | 80.81 |
| Solyc11g022410.1.1 | Tomato | extracellular | 13.23 | 77.03 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 65.66 | 76.9 |
| Solyc09g060130.1.1 | Tomato | cytosol | 74.48 | 72.3 |
| Solyc11g022430.1.1 | Tomato | cytosol | 28.77 | 69.27 |
| Solyc09g057540.2.1 | Tomato | cytosol | 78.89 | 68.41 |
| Solyc11g022420.1.1 | Tomato | cytosol | 75.87 | 68.27 |
| Solyc08g062520.2.1 | Tomato | cytosol | 75.87 | 63.99 |
| Solyc10g018020.1.1 | Tomato | extracellular | 46.64 | 59.82 |
| Solyc10g018030.1.1 | Tomato | cytosol | 56.84 | 59.32 |
| Solyc04g025490.1.1 | Tomato | cytosol | 32.48 | 57.85 |
| Solyc08g062510.2.1 | Tomato | nucleus | 86.08 | 56.81 |
| Solyc09g066050.2.1 | Tomato | cytosol | 72.16 | 56.24 |
| Solyc09g066030.1.1 | Tomato | nucleus | 87.7 | 52.28 |
| Solyc07g026560.1.1 | Tomato | cytosol | 57.31 | 52.22 |
| Solyc05g015030.1.1 | Tomato | cytosol | 51.74 | 47.05 |
| Solyc11g011940.1.1 | Tomato | nucleus | 73.78 | 44.35 |
| Solyc04g025480.1.1 | Tomato | cytosol | 61.72 | 40.61 |
| Solyc07g037910.1.1 | Tomato | cytosol | 19.03 | 38.86 |
| CDY69499 | Canola | cytosol | 26.91 | 38.16 |
| CDY62389 | Canola | cytosol | 40.84 | 35.99 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 56.38 | 34.76 |
| Os06t0207966-00 | Rice | plastid | 19.26 | 31.56 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 43.62 | 26.33 |
| CDX85461 | Canola | cytosol | 41.76 | 25.53 |
| Bra023611.1-P | Field mustard | nucleus | 41.76 | 25.53 |
| KRH36827 | Soybean | nucleus | 41.76 | 25.39 |
| KRH11810 | Soybean | nucleus | 41.76 | 25.25 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 42.23 | 25.17 |
| CDY53691 | Canola | nucleus | 40.84 | 24.79 |
| Bra003213.1-P | Field mustard | nucleus | 40.84 | 24.79 |
| AT3G03260.1 | Thale cress | nucleus | 39.91 | 24.61 |
| CDY02713 | Canola | nucleus | 41.53 | 24.22 |
| Solyc03g031760.2.1 | Tomato | cytosol | 35.27 | 24.17 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 38.28 | 24.09 |
| AT1G34650.1 | Thale cress | nucleus | 39.44 | 24.01 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 38.05 | 23.94 |
| Zm00001d018225_P001 | Maize | nucleus | 38.05 | 23.7 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 38.28 | 23.67 |
| Solyc03g098200.2.1 | Tomato | nucleus | 39.44 | 23.58 |
| GSMUA_Achr10P... | Banana | nucleus | 37.12 | 23.46 |
| Zm00001d044973_P001 | Maize | nucleus | 37.35 | 23.37 |
| GSMUA_Achr10P... | Banana | nucleus | 38.52 | 23.35 |
| Zm00001d052133_P001 | Maize | nucleus | 37.59 | 23.21 |
| EER89393 | Sorghum | nucleus | 37.59 | 23.14 |
| EES05874 | Sorghum | nucleus | 37.82 | 23.06 |
| KRH36826 | Soybean | nucleus | 38.05 | 23.0 |
| Zm00001d037140_P004 | Maize | nucleus | 36.66 | 23.0 |
| AT5G17320.1 | Thale cress | nucleus | 38.05 | 22.84 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 38.98 | 22.83 |
| Bra032003.1-P | Field mustard | nucleus | 36.43 | 22.79 |
| CDY16938 | Canola | nucleus | 34.8 | 22.73 |
| CDY43137 | Canola | nucleus | 36.19 | 22.64 |
| CDY67945 | Canola | nucleus | 36.19 | 22.64 |
| CDY42301 | Canola | nucleus | 36.19 | 22.61 |
| KRH42429 | Soybean | cytosol | 38.05 | 22.47 |
| Bra020066.1-P | Field mustard | nucleus | 35.5 | 22.43 |
| Solyc10g006420.2.1 | Tomato | cytosol | 27.38 | 22.39 |
| Solyc06g072310.2.1 | Tomato | nucleus | 37.12 | 22.32 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 37.82 | 22.06 |
| Bra021363.1-P | Field mustard | nucleus | 37.12 | 22.01 |
| CDY49937 | Canola | nucleus | 35.27 | 21.9 |
| CDY21211 | Canola | nucleus | 35.03 | 21.76 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 30.39 | 21.72 |
| CDY44946 | Canola | nucleus | 32.02 | 21.3 |
| Solyc10g005330.2.1 | Tomato | nucleus | 34.8 | 21.07 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 35.03 | 20.83 |
| KRH42428 | Soybean | nucleus | 36.43 | 20.74 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 35.03 | 20.63 |
| Solyc07g041850.1.1 | Tomato | nucleus | 32.48 | 20.59 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 34.8 | 20.55 |
| Solyc02g080260.2.1 | Tomato | nucleus | 34.57 | 19.84 |
| Solyc12g005830.1.1 | Tomato | nucleus | 33.41 | 19.17 |
| Solyc03g120620.2.1 | Tomato | nucleus | 34.34 | 19.1 |
| Solyc01g091630.2.1 | Tomato | nucleus | 35.73 | 18.76 |
| Solyc06g050160.2.1 | Tomato | nucleus | 27.61 | 18.22 |
| Solyc06g035940.2.1 | Tomato | nucleus | 28.54 | 18.2 |
| Solyc08g076370.2.1 | Tomato | nucleus | 33.87 | 17.34 |
| Solyc03g026070.2.1 | Tomato | nucleus | 28.07 | 14.99 |
| Solyc04g025740.1.1 | Tomato | nucleus | 0.23 | 0.68 |
| Solyc07g026570.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| Os06t0208100-00 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.3.3 | Gene3D:3.30.530.20 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 | InterPro:IPR002913 |
| InterPro:IPR023393 | UniProt:K4CUN3 | PFAM:PF01852 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF504 |
| SMART:SM00234 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | EnsemblPlantsGene:Solyc09g066070.2 | EnsemblPlants:Solyc09g066070.2.1 |
| UniParc:UPI000276CB4A | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:64394724..64401033
Molecular Weight (calculated)
48550.3 Da
IEP (calculated)
4.646
GRAVY (calculated)
-0.029
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRIESSKDF GIVSMTAIEL IHNFLDPVKW MNLFPTIVTE AKTIEVLDSG TWGGSIQLMY EKLHILSPLV EAREFLFIRC CRQLDATTWI MVDISYDIFN
101: EIQSGVPCYS WKFPSGCVIQ DMGNGQSKVT WVEHVQVYEK YQVNSIFRDL LCDREAYGAK RWIVTLQRMS ERCNFSMGST YPTRHDFKGV FHDPEGVKNT
201: IQVSQRMVKS FFEILSMTDY DGDFPTSSQV NRVDRISVRE NEEIIEPKGF IAIATASLWL PLSFQDVFDF FKDDKTRNQW DILIGENNVI ELDRVPTGTF
301: LGNNITIIQP YNMHKEMLVL EETSIDEMGA FLVYAPIEIR AITSIVNGVD ATKVPILPSG IIISPDGRLS SNSDNTANAQ NGSILTVAFQ ILICGDNPTS
401: KQQQFDVVAS VHGVLGATIL KIKEALGCSD L
101: EIQSGVPCYS WKFPSGCVIQ DMGNGQSKVT WVEHVQVYEK YQVNSIFRDL LCDREAYGAK RWIVTLQRMS ERCNFSMGST YPTRHDFKGV FHDPEGVKNT
201: IQVSQRMVKS FFEILSMTDY DGDFPTSSQV NRVDRISVRE NEEIIEPKGF IAIATASLWL PLSFQDVFDF FKDDKTRNQW DILIGENNVI ELDRVPTGTF
301: LGNNITIIQP YNMHKEMLVL EETSIDEMGA FLVYAPIEIR AITSIVNGVD ATKVPILPSG IIISPDGRLS SNSDNTANAQ NGSILTVAFQ ILICGDNPTS
401: KQQQFDVVAS VHGVLGATIL KIKEALGCSD L
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.