Factsheet for Solyc03g120620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006770	Potato	nucleus	95.87	96.24
VIT_09s0002g04340.t01	Wine grape	nucleus	69.55	71.87
KRH23432	Soybean	plastid	68.13	69.29
KRH09884	Soybean	plastid	67.1	69.24
KRH47277	Soybean	nucleus	64.0	66.05
KRH44348	Soybean	nucleus	62.71	64.97
Bra003535.1-P	Field mustard	nucleus	59.74	61.73
GSMUA_Achr3P15400_001	Banana	nucleus	59.48	61.55
AT1G79840.2	Thale cress	nucleus, plastid	61.03	60.95
GSMUA_Achr8P27340_001	Banana	nucleus	57.42	59.41
CDX79408	Canola	nucleus	59.74	59.36
CDX67929	Canola	nucleus	59.61	59.0
Os01t0760800-00	Rice	nucleus	9.81	56.72
HORVU0Hr1G006920.1	Barley	nucleus	7.1	55.56
TraesCS3B01G331200.1	Wheat	nucleus	50.84	52.19
TraesCS3A01G305300.1	Wheat	nucleus	50.84	51.77
HORVU3Hr1G073290.1	Barley	nucleus	43.48	51.37
OQU87592	Sorghum	nucleus	42.32	46.13
TraesCS3D01G296500.3	Wheat	nucleus	47.23	46.1
Solyc03g031760.2.1	Tomato	cytosol	35.23	43.4
Solyc10g005330.2.1	Tomato	nucleus	39.48	42.98
Solyc02g080260.2.1	Tomato	nucleus	41.29	42.61
Solyc01g091630.2.1	Tomato	nucleus	44.52	42.02
Solyc03g098200.2.1	Tomato	nucleus	37.16	39.94
Solyc06g072310.2.1	Tomato	nucleus	36.0	38.91
Solyc12g005830.1.1	Tomato	nucleus	36.39	37.55
Solyc07g041850.1.1	Tomato	nucleus	32.13	36.62
Solyc11g022410.1.1	Tomato	extracellular	3.35	35.14
Solyc06g035940.2.1	Tomato	nucleus	30.58	35.06
Solyc09g066070.2.1	Tomato	cytosol	19.1	34.34
Solyc06g050160.2.1	Tomato	nucleus	28.65	34.0
Solyc03g026070.2.1	Tomato	nucleus	34.84	33.46
Solyc08g076370.2.1	Tomato	nucleus	36.13	33.25
Solyc04g025740.1.1	Tomato	nucleus	6.19	32.43
Solyc10g018030.1.1	Tomato	cytosol	16.65	31.23
Solyc09g060140.2.1	Tomato	mitochondrion	14.71	30.98
Solyc07g026560.1.1	Tomato	cytosol	18.84	30.87
Solyc09g060170.1.1	Tomato	cytosol	13.42	30.23
Solyc10g018020.1.1	Tomato	extracellular	13.03	30.06
Solyc11g011940.1.1	Tomato	nucleus	27.74	29.99
Solyc09g057530.1.1	Tomato	cytosol	5.29	29.93
Solyc10g018000.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	26.97	29.9
Solyc07g026570.1.1	Tomato	nucleus	5.42	29.79
Solyc04g025490.1.1	Tomato	cytosol	9.29	29.75
Solyc09g066030.1.1	Tomato	nucleus	27.74	29.74
Solyc11g022420.1.1	Tomato	cytosol	18.19	29.44
Solyc09g057540.2.1	Tomato	cytosol	18.84	29.38
Solyc08g062510.2.1	Tomato	nucleus	24.52	29.1
Solyc11g022430.1.1	Tomato	cytosol	6.71	29.05
Solyc09g060130.1.1	Tomato	cytosol	16.52	28.83
Solyc09g066050.2.1	Tomato	cytosol	20.39	28.57
Solyc10g006420.2.1	Tomato	cytosol	19.35	28.46
Solyc04g025480.1.1	Tomato	cytosol	23.23	27.48
Solyc05g015030.1.1	Tomato	cytosol	16.77	27.43
Solyc07g037910.1.1	Tomato	cytosol	7.23	26.54
Solyc08g062520.2.1	Tomato	cytosol	16.9	25.64

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
UniProt:K4BML1	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF272	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START_lipid-bd_dom	EnsemblPlantsGene:Solyc03g120620.2	EnsemblPlants:Solyc03g120620.2.1	UniParc:UPI0002766D6F	SEG:seg	:

Description

Homeobox-leucine zipper protein GLABRA 2 [Source:Projected from Arabidopsis thaliana (AT1G79840) UniProtKB/Swiss-Prot;Acc:P46607]

Coordinates

chr3:+:68967463..68973582

Molecular Weight (calculated)

86184.9 Da

IEP (calculated)

6.347

GRAVY (calculated)

-0.523

Length

775 amino acids

Sequence
(BLAST)

001: MGVVDMSNNP PPHETKDFFP SPALSLSLAG IFRDGVGAGS SAGNMETTEE VEEGSAAGSR GVRPREETST VEISSENSEP MRSRGSDDDL EHDDTCNEDE
101: EDPNNNSKKK KQKKYHRHTV QQIREMEALF KESPHPDEKQ RQQLSKQLGL HPRQVKFWFQ NRRTQIKAIQ ERHENSLLKA EIEKLREENK GLRGNSKNPS
201: CPNCGFASST NNAPTLPAEE QQLRIENARL RAEVEKLRAA LGKYQIGTSP NSSSSCSGGN DEENKSALDF YTGIFGLEKP RIMHIVNQAM EQLQKMATSG
301: EPLWIKSFET GREILNYDEY TKEFPPIDKS GDVKSKIMGI EASRDTGIVF MELPRLVQTF MDVNQWREMF PSMISKAATV DVICNGTEGA NSWDGAIQLM
401: FAEVQMLTPV VGTREVYFVR YCKQMSAAQW GIVDVSVDKV EASIDASLLK CRKLPSGCIL QEQSNAHCKV TWVEHLECQK NIVDSLYRVT VNSGQAFGAR
501: RWMATLQQQC ERLLFFMATN IPTKDTTGVA TLAGRKSILT LAQRMTRGFY RVLGASSYNT WNKIPSKTGQ EDIRVISRRN LTDPGEPQGL ILCAASSIWL
601: PVSRNVLFDF LKDENHRHEW DVMSNGGPVQ SVANLAKGQD KGNAVSIQAV KLRENNMWIL QDTSTNAYES AVVYAPVDIA GMQSVITGCD SSNIAALPSG
701: FSILPDGLES RPFVITSRPE DRSSEGGSLL TVAFQILTSN STTAKLSKES VESINNLLSC TLHKIKTRFQ CDNGY

Best Arabidopsis Sequence Match ( AT1G79840.1 )
(BLAST)

001: MSMAVDMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVV DDEDRTVEMS SENSGPTRSR SEEDLEGEDH DDEEEEEEDG AAGNKGTNKR
101: KRKKYHRHTT DQIRHMEALF KETPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKA ELEKLREENK AMRESFSKAN SSCPNCGGGP
201: DDLHLENSKL KAELDKLRAA LGRTPYPLQA SCSDDQEHRL GSLDFYTGVF ALEKSRIAEI SNRATLELQK MATSGEPMWL RSVETGREIL NYDEYLKEFP
301: QAQASSFPGR KTIEASRDAG IVFMDAHKLA QSFMDVGQWK ETFACLISKA ATVDVIRQGE GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLSPE
401: KWAIVDVSVS VEDSNTEKEA SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL DVSASTVQPL FRSLVNTGLA FGARHWVATL QLHCERLVFF MATNVPTKDS
501: LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWTKITT KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPALL FDFFRDEARR HEWDALSNGA
601: HVQSIANLSK GQDRGNSVAI QTVKSREKSI WVLQDSSTNS YESVVVYAPV DINTTQLVLA GHDPSNIQIL PSGFSIIPDG VESRPLVITS TQDDRNSQGG
701: SLLTLALQTL INPSPAAKLN MESVESVTNL VSVTLHNIKR SLQIEDC

Arabidopsis Description

GL2HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.