Factsheet for VIT_09s0002g04340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09884	Soybean	plastid	81.47	81.36
KRH23432	Soybean	plastid	81.87	80.58
KRH47277	Soybean	nucleus	79.2	79.09
KRH44348	Soybean	nucleus	76.93	77.14
GSMUA_Achr3P15400_001	Banana	nucleus	72.67	72.76
PGSC0003DMT400006770	Potato	nucleus	73.07	70.98
Solyc03g120620.2.1	Tomato	nucleus	71.87	69.55
GSMUA_Achr8P27340_001	Banana	nucleus	67.33	67.42
Os01t0760800-00	Rice	nucleus	12.0	67.16
Bra003535.1-P	Field mustard	nucleus	64.93	64.93
AT1G79840.2	Thale cress	nucleus, plastid	65.6	63.4
CDX67929	Canola	nucleus	64.93	62.2
CDX79408	Canola	nucleus	64.67	62.18
HORVU0Hr1G006920.1	Barley	nucleus	7.6	57.58
HORVU3Hr1G073290.1	Barley	nucleus	50.0	57.16
TraesCS3B01G331200.1	Wheat	nucleus	57.07	56.69
TraesCS3A01G305300.1	Wheat	nucleus	57.47	56.64
TraesCS3D01G296500.3	Wheat	nucleus	52.27	49.37
OQU87592	Sorghum	nucleus	45.6	48.1
VIT_10s0116g00680.t01	Wine grape	nucleus	45.6	47.11
VIT_15s0048g02000.t01	Wine grape	nucleus	49.07	45.38
VIT_12s0059g02310.t01	Wine grape	nucleus	44.67	44.25
VIT_09s0018g02100.t01	Wine grape	nucleus	4.4	42.86
VIT_17s0053g00780.t01	Wine grape	nucleus	38.13	40.28
VIT_16s0100g00670.t01	Wine grape	nucleus	42.0	40.23
VIT_04s0079g00480.t01	Wine grape	nucleus	35.73	37.53
VIT_02s0012g02030.t01	Wine grape	nucleus	39.6	37.22
VIT_19s0177g00240.t01	Wine grape	cytosol, mitochondrion	10.8	34.18
VIT_13s0067g01580.t01	Wine grape	nucleus	4.8	32.14

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100256623	wikigene:100256623	MapMan:15.5.3.3	EMBL:AM441016	ProteinID:CAN76225
ProteinID:CAN76225.1	ProteinID:CBI36129	ProteinID:CBI36129.3	ncoils:Coil	UniProt:D7U0I3	EMBL:FN596494
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	EntrezGene:LOC100256623	wikigene:LOC100256623	PFAM:PF00046
PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF272
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	TIGR:TC70239
UniParc:UPI0001BE4864	ArrayExpress:VIT_09s0002g04340	EnsemblPlantsGene:VIT_09s0002g04340	EnsemblPlants:VIT_09s0002g04340.t01	unigene:Vvi.6342	RefSeq:XP_002284502
RefSeq:XP_002284502.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:-:3967729..3971991

Molecular Weight (calculated)

82963.5 Da

IEP (calculated)

6.379

GRAVY (calculated)

-0.466

Length

750 amino acids

Sequence
(BLAST)

001: MSNPPASRTK DFFASPALSL SLAGIFRDGG AAAAAAANME VEEGDEGSGG GRRDDTVEIS SENSGPARSR SEDEFDGEGE GDEDGEGEKG KKKKRKKYHR
101: HTAEQIREME ALFKESPHPD EKQRQQLSKQ LGLAPRQVKF WFQNRRTQIK AIQERHENSL LKSEMEKLRD ENKAMRETIK KSCCPNCGSA TSSRDPTMTT
201: EEQQLRIENA RLKAEVEKLR AVIGKYPPGT GSPSSSCSAG NDHENRSSLE FYTGIFGLEK SRIMEIVNQA MEELKKMATA GEPLWIRSVE TGREILNYDE
301: YMREFSVENS GNGRPKRSIE ASRETGVVFV DLPRLVQSFM DVNQWKEMFP CTISKAATVD IICNGEGPNR NGAVQLMFAE LQMLTPMVPT REVYFVRFCK
401: QLSADQWAIV DVSIDKVEDN IDASLVKCRK RPSGCIIEDK SNGHCKVIWV EHLECQKSTV HTMYRQIVNS GLAFGAKHWI ATLQLQCERL VFFMATNVPT
501: KDSSGVATLA GRKSILKLAQ RMTWSFCRAL GASSFNSWTK VSSKTGDDIR VASRKNLNDP GEPQGVILCA VSSVWLPVAP HVIFDFLRDE ARRSEWDIML
601: SGGPVQSIAN LAKGQDRGNA VTIQTMKSKD NSMWVVQDTC TNAYESMVVY APVDIPGMQS VMTGCDSSSI AILPSGFSIL PDGVESRPLV ITSRPEEKST
701: EGGSLLTIAF QVLTNTSPTA KLTMESVESV NTLVSCTLQN IKTSLQCEDG

Best Arabidopsis Sequence Match ( AT1G79840.1 )
(BLAST)

001: MSMAVDMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVV DDEDRTVEMS SENSGPTRSR SEEDLEGEDH DDEEEEEEDG AAGNKGTNKR
101: KRKKYHRHTT DQIRHMEALF KETPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKA ELEKLREENK AMRESFSKAN SSCPNCGGGP
201: DDLHLENSKL KAELDKLRAA LGRTPYPLQA SCSDDQEHRL GSLDFYTGVF ALEKSRIAEI SNRATLELQK MATSGEPMWL RSVETGREIL NYDEYLKEFP
301: QAQASSFPGR KTIEASRDAG IVFMDAHKLA QSFMDVGQWK ETFACLISKA ATVDVIRQGE GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLSPE
401: KWAIVDVSVS VEDSNTEKEA SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL DVSASTVQPL FRSLVNTGLA FGARHWVATL QLHCERLVFF MATNVPTKDS
501: LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWTKITT KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPALL FDFFRDEARR HEWDALSNGA
601: HVQSIANLSK GQDRGNSVAI QTVKSREKSI WVLQDSSTNS YESVVVYAPV DINTTQLVLA GHDPSNIQIL PSGFSIIPDG VESRPLVITS TQDDRNSQGG
701: SLLTLALQTL INPSPAAKLN MESVESVTNL VSVTLHNIKR SLQIEDC

Arabidopsis Description

GL2HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.