Factsheet for VIT_12s0059g02310.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56105	Soybean	nucleus	84.94	88.2
KRH25398	Soybean	plastid	87.05	86.6
KRH26803	Soybean	nucleus	88.64	85.92
KRH22554	Soybean	nucleus	88.64	85.92
KRH13175	Soybean	cytosol	19.55	83.62
VIT_10s0116g00680.t01	Wine grape	nucleus	79.66	83.06
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	70.01	80.3
CDY06167	Canola	nucleus	75.83	79.72
Bra032478.1-P	Field mustard	nucleus	75.69	79.69
AT1G05230.5	Thale cress	nucleus	75.83	79.61
Bra015401.1-P	Field mustard	nucleus	75.43	79.31
Os04t0627000-02	Rice	cytosol, peroxisome	60.37	77.99
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	74.5	77.69
CDY10041	Canola	nucleus	76.09	77.11
EES11464	Sorghum	nucleus	77.67	74.52
GSMUA_Achr10P...	Banana	nucleus	69.09	73.15
EES13460	Sorghum	mitochondrion, nucleus	74.64	72.34
GSMUA_Achr11P...	Banana	plastid	75.3	72.24
Zm00001d002234_P003	Maize	nucleus	75.56	72.04
CDY71572	Canola	nucleus	37.38	72.01
CDY49515	Canola	plasma membrane	76.35	71.27
TraesCS2B01G497500.1	Wheat	nucleus	72.92	71.23
TraesCS2D01G473700.1	Wheat	nucleus	72.92	71.13
TraesCS2A01G474000.1	Wheat	nucleus	72.92	71.04
Os08t0136100-01	Rice	nucleus	73.45	70.83
Zm00001d049443_P005	Maize	nucleus	74.11	70.48
CDY46842	Canola	nucleus	76.22	69.52
TraesCS7A01G308400.1	Wheat	nucleus	72.39	68.84
TraesCS7D01G305200.1	Wheat	nucleus	72.26	68.72
TraesCS7B01G208600.1	Wheat	nucleus	72.39	68.67
Zm00001d026351_P003	Maize	nucleus	76.49	68.6
Zm00001d000247_P001	Maize	plasma membrane	63.8	67.18
Zm00001d024701_P001	Maize	nucleus	69.62	66.12
EES14500	Sorghum	nucleus	70.67	65.72
CDY23096	Canola	nucleus	11.36	65.15
VIT_15s0048g02000.t01	Wine grape	nucleus	57.2	53.39
VIT_17s0053g00780.t01	Wine grape	nucleus	48.48	51.69
Os08t0187500-01	Rice	nucleus	21.53	50.0
VIT_19s0177g00240.t01	Wine grape	cytosol, mitochondrion	14.53	46.41
VIT_16s0100g00670.t01	Wine grape	nucleus	47.95	46.36
VIT_02s0012g02030.t01	Wine grape	nucleus	47.29	44.86
VIT_09s0002g04340.t01	Wine grape	nucleus	44.25	44.67
VIT_04s0079g00480.t01	Wine grape	nucleus	41.61	44.12
VIT_09s0018g02100.t01	Wine grape	nucleus	4.1	40.26
VIT_13s0067g01580.t01	Wine grape	nucleus	4.23	28.57

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100261842	wikigene:100261842	MapMan:15.5.3.3	Gene3D:3.30.530.20	EMBL:AM477824
ProteinID:CAN66212	ProteinID:CAN66212.1	ProteinID:CBI28946	ProteinID:CBI28946.3	ncoils:Coil	UniProt:D7TEM3
EMBL:FN595765	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009653
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010090	GO:GO:0016043	GO:GO:0030154
GO:GO:0043565	GO:GO:0048497	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	InterPro:IPR023393	EntrezGene:LOC100261842	wikigene:LOC100261842	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF513	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI00019845B3
ArrayExpress:VIT_12s0059g02310	EnsemblPlantsGene:VIT_12s0059g02310	EnsemblPlants:VIT_12s0059g02310.t01	unigene:Vvi.11868	RefSeq:XP_002273837	RefSeq:XP_002273837.2
RefSeq:XP_010657311.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:7101040..7107270

Molecular Weight (calculated)

82703.5 Da

IEP (calculated)

5.739

GRAVY (calculated)

-0.289

Length

757 amino acids

Sequence
(BLAST)

001: MPAGIMIPAT HMPSMMGRNG NVAAYGSSSG LSLGQPNMMD GQLHPLDMTQ NTSESEIARL REDDFDSKSG SENHEGASGD DQDPNQRPKK KRYHRHTQHQ
101: IQEMEAFFKE CPHPDDKQRK ELSRELGLEP LQVKFWFQNK RTQMKTQHER HENTQLRSEN EKLRTENLRY REALSNASCP NCGGPTAIGE MSFDEHHLRL
201: ENARLREEID RISAIAAKYV GKPVVNYPLI PQVPTRPLDL GVGNFGAQPG LGGELFGASD LLRSINGPTE ADKPMIIELA VAAMEELFRM AQMGEPLWLP
301: SLDGTTTELS EDEYIRSFPR GIGPKPPGFK CEASRETAVV IMNHISLVEI LMDVNQWSTV FSGIVSRAMT LEVLSTGVAG NYNGAFQVMT AEFQVPSPLV
401: PTRESYFVRY CKQHADGTWA VVDVSLDNLR PSPVVRCRRR PSGCLIQEMP NGYSKVTWVE HVEVDDRGVH NIYKQLVNSG LAFGAKRWVA TLDRQCERLA
501: SAMATNIPTG EVGVITSQEG RKSMLKLAER MVISFCAGVS ASTAHTWTTL SGSGADDVRV MTRKSVDDPG RPPGIVLSAA TSFWLPVPPK RVFDFLRDEN
601: SRSEWDILSN GGVVQEMAHI ANGQDTGNCV SLLRVNSANS SQSNMLILQE SCTDSTASFV IYAPVDVVAM NMVLNGGDPD YVALLPSGFA ILPDGTTAHG
701: GVIGEVGSGG SLLTVAFQIL VDSVPTAKLS LGSVATVNNL IACTVDRIKA AVSCENA

Best Arabidopsis Sequence Match ( AT1G05230.8 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.