CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002234_P003	Maize	nucleus	90.62	90.05
Os04t0627000-02	Rice	cytosol, peroxisome	66.67	89.76
Zm00001d026351_P003	Maize	nucleus	90.87	84.95
TraesCS2B01G497500.1	Wheat	nucleus	82.0	83.48
TraesCS2D01G473700.1	Wheat	nucleus	82.0	83.38
TraesCS2A01G474000.1	Wheat	nucleus	82.0	83.27
HORVU2Hr1G106970.2	Barley	nucleus, plastid	82.0	83.27
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	68.06	81.36
EES13460	Sorghum	mitochondrion, nucleus	80.35	81.18
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	72.62	78.93
PGSC0003DMT400061859	Potato	nucleus	68.57	78.52
VIT_10s0116g00680.t01	Wine grape	nucleus	72.12	78.37
VIT_12s0059g02310.t01	Wine grape	nucleus	74.52	77.67
KRH56105	Soybean	nucleus	70.85	76.68
Solyc03g031760.2.1	Tomato	cytosol	61.09	76.63
PGSC0003DMT400029291	Potato	nucleus	66.29	75.04
KRH25398	Soybean	plastid	72.24	74.9
CDX90879	Canola	nucleus	67.93	74.86
CDY21319	Canola	nucleus	67.81	74.72
GSMUA_Achr11P...	Banana	plastid	74.52	74.52
Solyc10g005330.2.1	Tomato	nucleus	67.17	74.44
Bra000807.1-P	Field mustard	nucleus	56.02	74.04
KRH13175	Soybean	cytosol	16.6	74.01
KRH27601	Soybean	nucleus	68.31	73.63
GSMUA_Achr10P...	Banana	nucleus	66.67	73.57
CDX98703	Canola	nucleus	64.64	73.38
KRH77881	Soybean	nucleus	67.93	73.32
CDY16639	Canola	nucleus	68.06	73.26
KRH22554	Soybean	nucleus	72.5	73.24
KRH26803	Soybean	nucleus	72.37	73.11
CDX94054	Canola	nucleus	64.39	73.09
CDY27417	Canola	nucleus	66.03	72.97
CDX94586	Canola	nucleus	67.68	72.95
AT1G05230.5	Thale cress	nucleus	66.41	72.68
CDY06167	Canola	nucleus	66.29	72.64
PGSC0003DMT400005277	Potato	nucleus	67.43	72.58
Bra015401.1-P	Field mustard	nucleus	66.16	72.5
Bra029527.1-P	Field mustard	nucleus	68.44	72.48
Bra032478.1-P	Field mustard	nucleus	66.03	72.46
CDX76399	Canola	nucleus	65.65	72.45
AT4G04890.1	Thale cress	nucleus	68.06	72.27
AT4G21750.3	Thale cress	nucleus	68.95	71.39
Solyc02g080260.2.1	Tomato	nucleus	67.55	70.97
CDY66622	Canola	nucleus	65.65	70.86
Bra038757.1-P	Field mustard	nucleus	64.89	70.62
CDX79091	Canola	nucleus	66.16	69.97
CDY10041	Canola	nucleus	66.16	69.88
Bra020872.1-P	Field mustard	nucleus	65.53	69.12
Bra013556.1-P	Field mustard	nucleus	59.57	68.12
EES14500	Sorghum	nucleus	68.44	66.34
CDY49515	Canola	plasma membrane	66.92	65.1
CDY71572	Canola	nucleus	32.32	64.89
CDY46842	Canola	nucleus	66.54	63.25
CDY23096	Canola	nucleus	10.39	62.12
KRG91238	Soybean	nucleus	55.64	60.05
KRH35579	Soybean	nucleus	56.53	57.33
EES02604	Sorghum	nucleus	50.82	49.2
EES05874	Sorghum	nucleus	43.35	48.37
EER89393	Sorghum	nucleus	42.59	48.0
VIT_19s0177g00240.t01	Wine grape	cytosol, mitochondrion	13.94	46.41
KXG26935	Sorghum	nucleus	46.64	45.89
EER99222	Sorghum	nucleus	48.16	43.58
PGSC0003DMT400037397	Potato	cytosol	24.97	40.12
KRH22254	Soybean	cytosol	26.11	38.5
Solyc10g006420.2.1	Tomato	cytosol	25.6	38.33
KXG38837	Sorghum	nucleus	42.21	37.76
OQU87592	Sorghum	nucleus	32.32	35.87
KRH27078	Soybean	extracellular, golgi, peroxisome	14.83	35.45
EER98409	Sorghum	nucleus	29.02	31.37
EES01587	Sorghum	nucleus	29.78	30.92
OQU81266	Sorghum	nucleus	30.04	30.82
OQU81174	Sorghum	nucleus	28.77	30.76

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	UniProt:C5YG87	ncoils:Coil	EnsemblPlants:EES11464	ProteinID:EES11464
ProteinID:EES11464.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005886	GO:GO:0006139	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF513	SMART:SM00234	SMART:SM00389	EnsemblPlantsGene:SORBI_3006G223300
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI00081ABA90	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:56941457..56947804

Molecular Weight (calculated)

85262.2 Da

IEP (calculated)

5.532

GRAVY (calculated)

-0.276

Length

789 amino acids

Sequence
(BLAST)

001: MMIPARHMPP MIVRNSAAAY GSSSALSLSQ PNLLDSQQQL QLQQALQQQH LLDQIPATTA ESGDNMGRSG GGRGSDPLMG GDEFESKSGS ENVDGVSVDD
101: QDPNQRPSKK KRYHRHTQHQ IQEMEAFFKE CPHPDDKQRK ELSRELGLEP LQVKFWFQNK RTQMKNQHER HENSQLRAEN EKLRAENMRY KEALSSASCP
201: NCGGPAALGE MSFDEHHLRV ENARLREEID RISAIAAKYV GKPMVSFPVL SSPLAGARPS PLDIGGGVGG AAAYGAVDMF GGGVAVDLLR GAVPQSDADK
301: PMIVELAVTA MEELVRMAQL DEPLWNAPGL DGSAETLNEE EYAHMFPGGL GPKQYGFKSE ASRDSSVVIM THANLVEILM DVNQYATVFS SIVSRAVTLE
401: VLSTGVAGNY NGALQVMSVE FQVPSPLVPT RESYFVRYCK QNADGSWAVV DVSLDSLRPN SVLKCRRRPS GCLIQEMPNG YSKVTWVEHV EVDDRSVHNI
501: YKLLVNSGLA FGARRWVGTL DRQCERLASV MASNIPTSDI GVITSTEGRK SMLKLAERMV MSFCGGVTAS AAHQWTTLSG SGAEDVRVMT RKSVDDPGRP
601: PGIVLNAATS FWLPVPPKRV FDFLRDESSR SEWDILSNGG VVQEMAHIAN GRDHGNCVSL LRVNSTNSNQ SNMLILQESC TDASGSYVIY APVDVVAMNV
701: VLNGGDPDYV ALLPSGFAIL PDGPAGSNMQ GDGGVGSGGS LLTVAFQILV DSVPTAKLSL GSVATVNSLI ACTVERIKAA VSGESNPQQ

Best Arabidopsis Sequence Match ( AT1G05230.8 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.