CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35579	Soybean	nucleus	86.05	80.85
KRH77881	Soybean	nucleus	64.02	64.02
KRH27601	Soybean	nucleus	64.02	63.93
KRH13175	Soybean	cytosol	15.32	63.28
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	56.77	62.88
KRH56105	Soybean	nucleus	61.83	62.0
Os04t0627000-02	Rice	cytosol, peroxisome	49.11	61.26
KRH25398	Soybean	plastid	61.56	59.13
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	57.87	58.26
KRH26803	Soybean	nucleus	62.11	58.13
KRH22554	Soybean	nucleus	62.11	58.13
GSMUA_Achr10P...	Banana	nucleus	54.45	55.66
EES11464	Sorghum	nucleus	60.05	55.64
EES13460	Sorghum	mitochondrion, nucleus	58.96	55.19
Os08t0136100-01	Rice	nucleus	58.41	54.39
TraesCS2B01G497500.1	Wheat	nucleus	57.59	54.32
TraesCS2D01G473700.1	Wheat	nucleus	57.59	54.25
TraesCS2A01G474000.1	Wheat	nucleus	57.59	54.18
Zm00001d049443_P005	Maize	nucleus	58.82	54.02
GSMUA_Achr11P...	Banana	plastid	58.28	53.99
Zm00001d002234_P003	Maize	nucleus	58.0	53.4
TraesCS7A01G308400.1	Wheat	nucleus	57.46	52.76
TraesCS7D01G305200.1	Wheat	nucleus	57.32	52.64
TraesCS7B01G208600.1	Wheat	nucleus	57.32	52.51
Zm00001d024701_P001	Maize	nucleus	56.91	52.2
EES14500	Sorghum	nucleus	57.59	51.72
Zm00001d000247_P001	Maize	plasma membrane	50.62	51.46
Zm00001d026351_P003	Maize	nucleus	58.96	51.07
KRH38939	Soybean	nucleus	44.05	44.6
KRH35356	Soybean	nucleus	46.51	44.44
KRH09477	Soybean	nucleus	43.5	44.29
KRG91457	Soybean	nucleus	46.79	44.02
KRH60596	Soybean	nucleus	42.68	43.76
KRH41898	Soybean	nucleus	42.95	43.55
KRH00641	Soybean	nucleus	48.84	43.43
KRH40539	Soybean	nucleus	48.7	43.41
KRH48236	Soybean	nucleus	48.43	42.7
KRH65144	Soybean	nucleus	48.02	41.99
KRH38560	Soybean	nucleus	42.41	39.95
KRH09109	Soybean	plastid	42.13	39.74
KRH44348	Soybean	nucleus	38.99	38.1
KRH23432	Soybean	plastid	39.53	37.93
KRH47277	Soybean	nucleus	38.85	37.82
KRH74360	Soybean	nucleus	40.77	37.77
KRH09884	Soybean	plastid	38.44	37.42
KRH39579	Soybean	nucleus	40.36	36.88
KRH11810	Soybean	nucleus	35.43	36.33
KRH22254	Soybean	cytosol	26.54	36.26
KRH36827	Soybean	nucleus	34.75	35.83
Os08t0187500-01	Rice	nucleus	15.73	35.28
KRH27078	Soybean	extracellular, golgi, peroxisome	15.18	33.64
KRH36826	Soybean	nucleus	32.69	33.52
KRH42428	Soybean	nucleus	30.92	29.85
KRH42429	Soybean	cytosol	25.31	25.34

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100793758	MapMan:15.5.3.3	EMBL:ACUP02012669	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G142200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	UniProt:I1NGA8
InterPro:IPR001356	InterPro:IPR002913	EnsemblPlants:KRG91238	ProteinID:KRG91238	ProteinID:KRG91238.1	PFAM:PF00046
PFAM:PF01852	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI00023DBD49	SEG:seg

Description

hypothetical protein

Coordinates

chr20:+:38074528..38080908

Molecular Weight (calculated)

80366.7 Da

IEP (calculated)

6.610

GRAVY (calculated)

-0.339

Length

731 amino acids

Sequence
(BLAST)

001: MEMSLQRTSS ENNSGRNREE QEPSNKETTM EAPASGDDDQ DLEEGFKRRR HTRHTHHQIS EMESFFKGCP HPDEKQRKAL GRELGLEPLQ IKFWFQNKRT
101: QVKTQQERYE NNLLRVENDK LRAENRRYRN ALANALCPSC GGPTALGEMS FDEQQLRIEN ARLKEEIASM SGPAAKHAGK SGSNSYCNMP SQNQMPSRSL
201: DLGVGNNNKN NNFVAVAQAQ PAAMVGEIYG GNDPLRELPL FSCFDKTLIG EIGLVAIEEI NRLSLSGDPL WVPGNYGSEV VNEDEYLRVF PRGIGPTLLG
301: ARTESSRQTA IVIMHHMKLV EMLMDVNQWS NMFCGIVSRA VTHEVLSTGE TIRYDGACQV MSAEFQVPSP LVPTRDNYFI RFCKKHQGQS WAVVDFSMDH
401: LRPGAITKIR RRPSGCIIQE LPNGYSKVIW VEHVEVDDSE VHNLYKNLVD STLAFGAKRW VAAIDRTCER LASAMATNIP QGALCVITSH ESRKSMMKLA
501: ERMVLSFCTG VGASTANAWT PLPSGLEDVR VMTRKSVDDP GRPPGIVLSA ATSLWLPVPA RRVFEFLRSE NTRNQWDILS TGAQVNELAH IANGRDHGNC
601: VSLLRVNTQN VGQNNMLILQ ESFIDATGSF VIYAPIDVAA INVVLGGGNP DYVALLPSGF AVLPDGPGLN GGPGPICEAG SGGGCLLTVA FQILVDSAPT
701: SKISVGSVTT VNSLIKRTVE KIRDAVSLDG N

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.