CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47277	Soybean	nucleus	93.05	92.68
KRH09884	Soybean	plastid	79.14	78.83
KRH23432	Soybean	plastid	79.95	78.48
VIT_09s0002g04340.t01	Wine grape	nucleus	77.14	76.93
GSMUA_Achr3P15400_001	Banana	nucleus	64.97	64.89
PGSC0003DMT400006770	Potato	nucleus	65.78	63.73
Solyc03g120620.2.1	Tomato	nucleus	64.97	62.71
Bra003535.1-P	Field mustard	nucleus	62.7	62.53
Os01t0760800-00	Rice	nucleus	11.1	61.94
GSMUA_Achr8P27340_001	Banana	nucleus	61.5	61.42
AT1G79840.2	Thale cress	nucleus, plastid	63.37	61.08
CDX79408	Canola	nucleus	62.57	60.0
CDX67929	Canola	nucleus	62.57	59.77
HORVU3Hr1G073290.1	Barley	nucleus	46.39	52.9
TraesCS3B01G331200.1	Wheat	nucleus	53.21	52.72
HORVU0Hr1G006920.1	Barley	nucleus	6.95	52.53
TraesCS3A01G305300.1	Wheat	nucleus	53.07	52.17
TraesCS3D01G296500.3	Wheat	nucleus	49.2	46.35
KRH13175	Soybean	cytosol	10.96	46.33
OQU87592	Sorghum	nucleus	43.32	45.57
KRH56105	Soybean	nucleus	44.25	45.4
KRH25398	Soybean	plastid	44.25	43.5
KRH77881	Soybean	nucleus	42.25	43.23
KRH27601	Soybean	nucleus	41.98	42.9
KRH26803	Soybean	nucleus	44.52	42.64
KRH22554	Soybean	nucleus	44.38	42.51
KRH40539	Soybean	nucleus	46.39	42.32
KRH00641	Soybean	nucleus	45.86	41.73
KRH35356	Soybean	nucleus	42.38	41.44
KRH48236	Soybean	nucleus	45.86	41.38
KRH65144	Soybean	nucleus	45.86	41.03
KRG91457	Soybean	nucleus	42.51	40.93
KRH41898	Soybean	nucleus	38.1	39.53
KRH60596	Soybean	nucleus	37.57	39.41
KRH38939	Soybean	nucleus	37.97	39.34
KRH09477	Soybean	nucleus	37.7	39.28
KRG91238	Soybean	nucleus	38.1	38.99
KRH09109	Soybean	plastid	39.97	38.58
KRH38560	Soybean	nucleus	39.57	38.14
KRH35579	Soybean	nucleus	38.64	37.15
KRH74360	Soybean	nucleus	37.03	35.11
KRH39579	Soybean	nucleus	37.3	34.88
KRH36827	Soybean	nucleus	30.48	32.16
KRH11810	Soybean	nucleus	30.61	32.12
KRH36826	Soybean	nucleus	30.08	31.56
KRH22254	Soybean	cytosol	22.33	31.21
KRH27078	Soybean	extracellular, golgi, peroxisome	13.1	29.7
KRH42428	Soybean	nucleus	28.61	28.27
KRH42429	Soybean	cytosol	24.2	24.79

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100789432	MapMan:15.5.3.3	EMBL:ACUP02004927	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G204700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	UniProt:I1KV67	InterPro:IPR001356	InterPro:IPR002913	EnsemblPlants:KRH44348	ProteinID:KRH44348
ProteinID:KRH44348.1	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF272	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START_lipid-bd_dom	UniParc:UPI0002337E3F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:16593174..16599589

Molecular Weight (calculated)

83715.5 Da

IEP (calculated)

5.726

GRAVY (calculated)

-0.419

Length

748 amino acids

Sequence
(BLAST)

001: MGVNMSNTPP HTKDLFSSPV LSLSLAGIFR YAGEAAETSG MEMASDEVRQ EDTADISSDN SGPVRSRSEE DFDCDDVHDG DDKDNDDKNR KKKRKYHRHT
101: TEQIREMEAL FKESPHPDEK QRQKLSQQLG LAPRQVKFWF QNRRTQIKAL QERHENSLLK TELDKLREET KAMRETINKS CCPNCGMVTA TIDASMSTEE
201: KQLLIENAKL KAEVEKLRTA LGKFSPRTTS PTTSSAGHDE EENRNSLGFY SVLFGLDKSR IMDVANRATE ELIKMATMGE PLWVRSVETG REILNYDEYV
301: KEMAAENSGS ERPKTFIEAS RETEVVFMDL PRLLQSFLDV NQWKEMFPCL ISKAVTVDVI SNGEGSNRNG AVQLMFAELQ MLTPMVPTRE VYFVRCCKQL
401: SDEQWAIVDV SIDKVEDNID ASLVKCRKRP SGCIIEDKSN GHCKVIWVEH LECQKSTIHT MYRTIVNSGL AFGARHWIAT LQLHCERLVF YMATNVPMKD
501: STGVATLAGR KSILKLAQRM TWSFCHAIGA SSFHTWTMVT SKTGEDIRIS SRKNLNDPGE PLGVILSAVS SVWLPVSTNV LFDFLRDEAR RSEWDIMSSG
601: GSVQSVANLA KGKDRGNVVN IQKIQSKDNS VWILQDSCTS AYESMVVYAP VEFAGIQSVL TGCDSSNLAI LPSGFSILPD GIEGRPLVIS SRQEEKYTEG
701: GSLFTMAFQI LVNPSPTVKL TTESVESVNN LVSCTLRNIK TSLQCEDG

Best Arabidopsis Sequence Match ( AT1G79840.1 )
(BLAST)

001: MSMAVDMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVV DDEDRTVEMS SENSGPTRSR SEEDLEGEDH DDEEEEEEDG AAGNKGTNKR
101: KRKKYHRHTT DQIRHMEALF KETPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKA ELEKLREENK AMRESFSKAN SSCPNCGGGP
201: DDLHLENSKL KAELDKLRAA LGRTPYPLQA SCSDDQEHRL GSLDFYTGVF ALEKSRIAEI SNRATLELQK MATSGEPMWL RSVETGREIL NYDEYLKEFP
301: QAQASSFPGR KTIEASRDAG IVFMDAHKLA QSFMDVGQWK ETFACLISKA ATVDVIRQGE GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLSPE
401: KWAIVDVSVS VEDSNTEKEA SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL DVSASTVQPL FRSLVNTGLA FGARHWVATL QLHCERLVFF MATNVPTKDS
501: LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWTKITT KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPALL FDFFRDEARR HEWDALSNGA
601: HVQSIANLSK GQDRGNSVAI QTVKSREKSI WVLQDSSTNS YESVVVYAPV DINTTQLVLA GHDPSNIQIL PSGFSIIPDG VESRPLVITS TQDDRNSQGG
701: SLLTLALQTL INPSPAAKLN MESVESVTNL VSVTLHNIKR SLQIEDC

Arabidopsis Description

GL2HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.