CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93211
KRG94078
KRG98388
KRH07149
KRH46471
KRH73971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61150.1	KRG98388	AT1G51355.1	21798944
AT3G61150.1	KRH46471	AT1G51355.1	21798944
AT3G61150.1	KRH73971	AT1G51355.1	21798944
AT3G61150.1	KRG93211	AT3G27580.1	21798944
AT3G61150.1	KRG94078	AT3G27580.1	21798944
AT3G61150.1	KRH07149	AT3G27580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65144	Soybean	nucleus	96.5	95.69
Os09t0526300-00	Rice	nucleus	13.75	87.02
VIT_15s0048g02000.t01	Wine grape	nucleus	83.11	84.96
KRH00641	Soybean	nucleus	82.51	83.21
KRH40539	Soybean	nucleus	81.42	82.32
PGSC0003DMT400071377	Potato	nucleus	80.22	81.0
Solyc01g091630.2.1	Tomato	nucleus	80.1	80.88
PGSC0003DMT400019986	Potato	nucleus	71.29	73.05
GSMUA_Achr1P18760_001	Banana	nucleus	64.17	70.37
CDX74347	Canola	nucleus	67.31	70.37
CDY18903	Canola	nucleus	59.83	70.35
CDX91894	Canola	nucleus	67.19	70.15
Bra037355.1-P	Field mustard	nucleus	66.83	70.13
CDY51143	Canola	nucleus	66.83	70.13
CDX74762	Canola	nucleus	59.71	69.92
AT4G00730.1	Thale cress	nucleus	67.43	69.7
CDY07201	Canola	nucleus	66.1	69.54
CDY45684	Canola	nucleus	65.5	69.26
CDX67855	Canola	nucleus	65.14	69.23
Bra003439.1-P	Field mustard	nucleus	65.38	69.04
AT3G61150.1	Thale cress	nucleus	65.5	67.2
Bra004934.1-P	Field mustard	nucleus	62.85	66.28
KRH35356	Soybean	nucleus	61.04	66.14
KRG91457	Soybean	nucleus	61.64	65.77
HORVU0Hr1G013510.1	Barley	cytosol	10.98	65.47
Os02t0674800-01	Rice	nucleus	62.85	64.8
GSMUA_Achr3P12410_001	Banana	nucleus	57.42	64.15
Zm00001d040090_P002	Maize	nucleus	62.0	64.01
HORVU6Hr1G065300.3	Barley	nucleus	61.76	64.0
TraesCS6A01G255800.1	Wheat	nucleus	61.52	63.43
TraesCS6B01G269700.1	Wheat	nucleus	61.4	63.31
TraesCS6D01G237000.1	Wheat	nucleus	61.4	63.31
EES02604	Sorghum	nucleus	62.12	63.19
KRH13175	Soybean	cytosol	12.91	60.45
Os04t0569100-01	Rice	nucleus	58.38	60.05
EER99222	Sorghum	nucleus	62.36	59.29
KRH56105	Soybean	nucleus	51.27	58.3
Zm00001d040091_P001	Maize	nucleus	18.34	58.24
HORVU5Hr1G080700.2	Barley	nucleus	59.71	58.03
TraesCS5D01G320600.1	Wheat	nucleus	59.23	57.83
TraesCS5B01G315100.2	Wheat	nucleus	59.23	57.76
TraesCS5A01G314400.2	Wheat	nucleus	58.99	57.6
KRH38560	Soybean	nucleus	53.32	56.96
KRH09109	Soybean	plastid	52.83	56.52
KRH25398	Soybean	plastid	51.87	56.5
KXG26935	Sorghum	nucleus	54.64	56.48
Zm00001d021236_P004	Maize	nucleus	61.4	56.37
KRH22554	Soybean	nucleus	52.11	55.31
KRH26803	Soybean	nucleus	51.87	55.06
KRH77881	Soybean	nucleus	48.13	54.58
KRH27601	Soybean	nucleus	48.01	54.37
TraesCS2D01G398600.1	Wheat	nucleus	49.82	52.68
TraesCS2B01G419200.1	Wheat	nucleus	49.58	52.36
TraesCS2A01G401200.3	Wheat	nucleus	49.82	51.62
HORVU2Hr1G095210.1	Barley	nucleus	48.49	51.54
Zm00001d026088_P002	Maize	nucleus	51.63	51.32
KRH38939	Soybean	nucleus	44.39	50.97
KRH09477	Soybean	nucleus	43.91	50.7
KRG91238	Soybean	nucleus	42.7	48.43
KRH41898	Soybean	nucleus	41.86	48.13
KRH60596	Soybean	nucleus	41.25	47.97
KRH44348	Soybean	nucleus	41.38	45.86
KRH47277	Soybean	nucleus	41.38	45.67
KRH09884	Soybean	plastid	41.13	45.41
KRH23432	Soybean	plastid	41.5	45.14
KRH35579	Soybean	nucleus	42.22	44.99
KRH74360	Soybean	nucleus	41.5	43.6
HORVU4Hr1G062510.2	Barley	cytosol	14.48	43.32
KRH39579	Soybean	nucleus	41.25	42.75
HORVU7Hr1G036950.2	Barley	cytosol	9.29	42.08
KRH36827	Soybean	nucleus	32.57	38.08
KRH11810	Soybean	nucleus	32.45	37.73
HORVU3Hr1G108430.1	Barley	cytosol	14.72	36.64
KRH22254	Soybean	cytosol	22.2	34.39
KRH36826	Soybean	nucleus	29.55	34.36
KRH42428	Soybean	nucleus	28.23	30.91
KRH27078	Soybean	extracellular, golgi, peroxisome	11.94	30.0
KRH42429	Soybean	cytosol	24.73	28.08

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100811873	MapMan:15.5.3.3	EMBL:ACUP02004213	ncoils:Coil	EnsemblPlantsGene:GLYMA_07G076800
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:K7L099	EnsemblPlants:KRH48236	ProteinID:KRH48236
ProteinID:KRH48236.1	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF487	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START_lipid-bd_dom	UniParc:UPI0002338354	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:6980133..6986937

Molecular Weight (calculated)

90534.7 Da

IEP (calculated)

6.337

GRAVY (calculated)

-0.328

Length

829 amino acids

Sequence
(BLAST)

001: MSFGGLLDNK SGSGGARNNV SDIPYNNNNV TNTTTTNNDR MPFGAISQPR LVTTTPTLAK SMFNSSGLSL ALQQTNIDGQ EDVNRMAENT SEPNGLRRSR
101: EDEHESRSGS DNMDGASGDE HDAADNPPRK KRYHRHTPQQ IQELEALFKE CPHPDEKQRL ELSRRLCLET RQVKFWFQNR RTQMKTQLER HENTLLRQEN
201: DKLRAENMSI RDAMRNPMCS NCGGPAIIGE ISLEEQHLRI ENARLKDELD RVCVLAGKFL GRPVSSLPSS SLELGMRGNG FAGIPAATTL PLGQDFDMGM
301: SVSMNNNALA MVSPPTSARA AAAGFDRSVE RSMFLELALA AMDELVKIAQ TGEPLWMRNV EGGREILNNE EYVRTFTPCI GLRPNGFVSE ASRENGMVII
401: NSLALVETLM DSNRWAEMFP CIIARTSTTE VISSGINGTR NGALQLMHAE LQVLSPLVPV REVNFLRFCK QHAEGVWAVV DVSIDSIRES SGAPTFVNCR
501: RLPSGCVVQD MPNGYSKVTW VEHAEYDESQ VHQLYRPLLS SGMGFGAQRW VATLQRQCEC LAILMSSAAP SRDHSAITAG GRRSMMKLAQ RMTNNFCAGV
601: CASTVHKWNK LNAGNVDEDV RVMTRKSVDD PGEPPGIVLS AATSVWLPVS PHRLFDFLRD ERLRSEWDIL SNGGPMQEMA HIAKGQDHGN AVSLLRASAI
701: NSNQSSMLIL QETCIDAAGS LVVYAPVDIP AMHVVMNGGD SAYVALLPSG FAIVPDGPGS RGPPNGPTST TNGGDNGVTR VSGSLLTVAF QILVNSLPTA
801: KLTVESVETV NNLISCTVQK IKAALHCES

Best Arabidopsis Sequence Match ( AT3G61150.1 )
(BLAST)

001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST

Arabidopsis Description

HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.