CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44348	Soybean	nucleus	92.68	93.05
KRH23432	Soybean	plastid	81.76	80.58
KRH09884	Soybean	plastid	80.56	80.56
VIT_09s0002g04340.t01	Wine grape	nucleus	79.09	79.2
GSMUA_Achr3P15400_001	Banana	nucleus	65.25	65.42
PGSC0003DMT400006770	Potato	nucleus	66.98	65.16
Solyc03g120620.2.1	Tomato	nucleus	66.05	64.0
Os01t0760800-00	Rice	nucleus	11.19	62.69
Bra003535.1-P	Field mustard	nucleus	62.58	62.67
AT1G79840.2	Thale cress	nucleus, plastid	64.31	62.24
GSMUA_Achr8P27340_001	Banana	nucleus	61.38	61.55
CDX79408	Canola	nucleus	62.45	60.13
CDX67929	Canola	nucleus	62.45	59.9
HORVU0Hr1G006920.1	Barley	nucleus	7.59	57.58
HORVU3Hr1G073290.1	Barley	nucleus	47.27	54.12
TraesCS3B01G331200.1	Wheat	nucleus	54.33	54.04
TraesCS3A01G305300.1	Wheat	nucleus	54.46	53.75
TraesCS3D01G296500.3	Wheat	nucleus	50.33	47.61
OQU87592	Sorghum	nucleus	44.47	46.98
KRH13175	Soybean	cytosol	10.92	46.33
KRH56105	Soybean	nucleus	43.68	44.99
KRH77881	Soybean	nucleus	42.34	43.5
KRH27601	Soybean	nucleus	42.08	43.17
KRH25398	Soybean	plastid	43.68	43.1
KRH40539	Soybean	nucleus	45.94	42.07
KRH26803	Soybean	nucleus	43.68	42.0
KRH22554	Soybean	nucleus	43.68	42.0
KRH35356	Soybean	nucleus	42.34	41.57
KRH00641	Soybean	nucleus	45.41	41.48
KRH48236	Soybean	nucleus	45.67	41.38
KRG91457	Soybean	nucleus	42.34	40.93
KRH65144	Soybean	nucleus	45.41	40.79
KRH41898	Soybean	nucleus	38.35	39.94
KRH60596	Soybean	nucleus	37.82	39.83
KRH38939	Soybean	nucleus	38.22	39.75
KRH09477	Soybean	nucleus	37.95	39.69
KRG91238	Soybean	nucleus	37.82	38.85
KRH09109	Soybean	plastid	39.95	38.71
KRH38560	Soybean	nucleus	39.95	38.66
KRH35579	Soybean	nucleus	38.22	36.89
KRH39579	Soybean	nucleus	37.28	35.0
KRH74360	Soybean	nucleus	36.75	34.98
KRH36827	Soybean	nucleus	30.89	32.72
KRH11810	Soybean	nucleus	31.03	32.68
KRH36826	Soybean	nucleus	30.89	32.54
KRH22254	Soybean	cytosol	22.37	31.4
KRH27078	Soybean	extracellular, golgi, peroxisome	13.05	29.7
KRH42428	Soybean	nucleus	29.29	29.06
KRH42429	Soybean	cytosol	24.63	25.34

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100806193	MapMan:15.5.3.3	UniProt:A0A0K2CT17	EMBL:ACUP02004144	ncoils:Coil
EnsemblPlantsGene:GLYMA_07G019500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	UniProt:I1KGN5	InterPro:IPR001356	InterPro:IPR002913	EnsemblPlants:KRH47277
ProteinID:KRH47277	ProteinID:KRH47277.1	EMBL:KT031164	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF272	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0002337F06	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:1545811..1551567

Molecular Weight (calculated)

84105.7 Da

IEP (calculated)

5.718

GRAVY (calculated)

-0.462

Length

751 amino acids

Sequence
(BLAST)

001: MGVNMSNTPP HTKDLFSSSS LSLSLAGIFR HAGEAAETSG MEVAGGNEVR REDTVEISSD NSGPVRSRSE EDFDGEGLHE DDDDGDDKNR KKKKRKYHRH
101: TAEQIREMEA LFKESPHPDE KQRQQLSNQL GLAPRQVKFW FQNRRTQIKA IQERHENSLL KTELDRLREE NKAMRETINK SCCPNCGMVT ATIDASMSTE
201: EKQLLIENAK LKAEVEKLRT ALGKFSPRTT SPTTSSAGHH DEEENRSSLD FYNGIFGLDK SRIMDIANRA TEELIKMANM GEPLWVRSVE TGRDILNYDE
301: YVKEFEVENS GSERPKTFIE ASRETEVVFM DLPRLLQSFL DVNQWKEMFP CLISKAATVD VICNGEGSNR NGAVQLMFAE LQMLTPMVPT REVYFVRCGK
401: QLSDEQWAIV DVSIDKVEDN IDASLVKCRK RPSGCIIEDK SNGHCKVIWV EHLECQKSTI HTMYRTIVNS GLAFGARHWI ETLQLQCERL VFYMATNVPM
501: KDSTGVATLA GRKSILKLAQ RMTWSFCHAV GASSFHTWTK VTSKTGEDIR ISSRKNLNEP GEPLGVILCA VSSVWLPVSP NVLFDFLRDE ARRNEWDIMS
601: SGGSVQSIAN LAKGKDRGNV VNIQKIIQSK DNSVWILQDS CTSAYESTVV YAPVEFAGIQ SVLTGCDSSN LAILPSGFSI LPDGIEGRPL VITSRQEEKY
701: TEGGSLFTMA FQILANPSPT TKLTMESVES VNNLVSCTLR NIRTSLQCED G

Best Arabidopsis Sequence Match ( AT1G79840.1 )
(BLAST)

001: MSMAVDMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVV DDEDRTVEMS SENSGPTRSR SEEDLEGEDH DDEEEEEEDG AAGNKGTNKR
101: KRKKYHRHTT DQIRHMEALF KETPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKA ELEKLREENK AMRESFSKAN SSCPNCGGGP
201: DDLHLENSKL KAELDKLRAA LGRTPYPLQA SCSDDQEHRL GSLDFYTGVF ALEKSRIAEI SNRATLELQK MATSGEPMWL RSVETGREIL NYDEYLKEFP
301: QAQASSFPGR KTIEASRDAG IVFMDAHKLA QSFMDVGQWK ETFACLISKA ATVDVIRQGE GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLSPE
401: KWAIVDVSVS VEDSNTEKEA SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL DVSASTVQPL FRSLVNTGLA FGARHWVATL QLHCERLVFF MATNVPTKDS
501: LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWTKITT KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPALL FDFFRDEARR HEWDALSNGA
601: HVQSIANLSK GQDRGNSVAI QTVKSREKSI WVLQDSSTNS YESVVVYAPV DINTTQLVLA GHDPSNIQIL PSGFSIIPDG VESRPLVITS TQDDRNSQGG
701: SLLTLALQTL INPSPAAKLN MESVESVTNL VSVTLHNIKR SLQIEDC

Arabidopsis Description

GL2HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.