Factsheet for Bra003535.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67929	Canola	nucleus	98.67	94.51
AT1G79840.2	Thale cress	nucleus, plastid	91.73	88.66
KRH09884	Soybean	plastid	65.07	64.98
VIT_09s0002g04340.t01	Wine grape	nucleus	64.93	64.93
KRH23432	Soybean	plastid	64.93	63.91
KRH44348	Soybean	nucleus	62.53	62.7
KRH47277	Soybean	nucleus	62.67	62.58
Os01t0760800-00	Rice	nucleus	10.8	60.45
Solyc03g120620.2.1	Tomato	nucleus	61.73	59.74
PGSC0003DMT400006770	Potato	nucleus	61.47	59.72
GSMUA_Achr3P15400_001	Banana	nucleus	57.33	57.41
GSMUA_Achr8P27340_001	Banana	nucleus	56.0	56.07
HORVU0Hr1G006920.1	Barley	nucleus	7.2	54.55
HORVU3Hr1G073290.1	Barley	nucleus	45.07	51.52
TraesCS3B01G331200.1	Wheat	nucleus	51.2	50.86
TraesCS3A01G305300.1	Wheat	nucleus	50.93	50.2
TraesCS3D01G296500.3	Wheat	nucleus	48.0	45.34
OQU87592	Sorghum	nucleus	41.87	44.16
Bra000960.1-P	Field mustard	extracellular	6.53	41.88
Bra015401.1-P	Field mustard	nucleus	39.47	41.11
Bra032478.1-P	Field mustard	nucleus	38.8	40.47
Bra038757.1-P	Field mustard	nucleus	39.07	40.41
Bra000807.1-P	Field mustard	nucleus	32.13	40.37
Bra004934.1-P	Field mustard	nucleus	41.6	39.69
Bra020872.1-P	Field mustard	nucleus	39.47	39.57
Bra029527.1-P	Field mustard	nucleus	39.07	39.33
Bra037355.1-P	Field mustard	nucleus	40.67	38.61
Bra028295.1-P	Field mustard	nucleus	34.27	37.68
Bra003439.1-P	Field mustard	nucleus	39.33	37.58
Bra013556.1-P	Field mustard	nucleus	34.4	37.39
Bra016578.1-P	Field mustard	nucleus	33.73	36.99
Bra021779.1-P	Field mustard	nucleus	35.6	36.68
Bra003846.1-P	Field mustard	nucleus	34.13	36.31
Bra025938.1-P	Field mustard	nucleus	33.33	36.02
Bra015996.1-P	Field mustard	nucleus	34.13	35.7
Bra005588.1-P	Field mustard	nucleus	32.93	35.09
Bra021035.1-P	Field mustard	nucleus	31.2	31.88
Bra023611.1-P	Field mustard	nucleus	29.47	31.35
Bra017519.1-P	Field mustard	nucleus	33.47	30.76
Bra024984.1-P	Field mustard	nucleus	32.0	30.19
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	28.8	29.88
Bra003213.1-P	Field mustard	nucleus	28.27	29.86
Bra032003.1-P	Field mustard	nucleus	27.2	29.61
Bra020066.1-P	Field mustard	nucleus	26.67	29.33
Bra021363.1-P	Field mustard	nucleus	27.33	28.2
Bra013898.1-P	Field mustard	nucleus	22.4	26.97
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	8.67	22.73

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	EnsemblPlantsGene:Bra003535	EnsemblPlants:Bra003535.1	EnsemblPlants:Bra003535.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009653	GO:GO:0009957
GO:GO:0009987	GO:GO:0010062	GO:GO:0030154	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M4CH52	PFAM:PF00046
PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF482
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI00025419C6	SEG:seg	:	:	:	:

Description

AT1G79840 (E=0.0) GL2 | GL2 (GLABRA 2); DNA binding / transcription factor

Coordinates

chrA07:+:13674268..13678011

Molecular Weight (calculated)

83815.2 Da

IEP (calculated)

6.756

GRAVY (calculated)

-0.509

Length

750 amino acids

Sequence
(BLAST)

001: MSMAVEMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVA DDEDRTVEMS SENSGPTRSR SEDNLEGEDD QEEEEDGAGN KGNKRKRKKY
101: HRHTTDQIRH MEALFKETPH PDEKQRQQLS KQLGLAPRQV KFWFQNRRTQ IKAIQERHEN SLLKAELEKL REENKAMRES FSKANSSSCL NCGGGGGAGS
201: PDDLLLENTK LKAELDKLRA ALGRTPYPLQ ASCSDDQQRR VGSLELYTGV FALEKSRIVE IANRATLELQ KMATSGEPLW LRSLETGREI LNYDEYLKEF
301: PQDQTSSFHG RKTIEASRDV GIVFMDAHKL AQSFMDVEQW KEMFACLISK AVTVDVIRQG EGPSRIDGAI QLMFGEMQLL TPVVPTREVY FVRSCRQLSP
401: EKWAIVDVSV SMEEDNNAEK EGSLLRCRKR PSGCIIEDTS NGHSKVTWVE HLDLSASTVQ PLFRSFVNTG LAFGAKHWVA TLQLHCERLV FFMATNVPTK
501: DSLGVTTLAG RKSVLKMAQR MTQSFYRAIA ASSYHQWNKI TTKTGQDMRV SSRKNLHDPG EPTGVIVCAS SSLWLPVSPT LLFDFFRDET RRHEWDALSN
601: GAHVQSIVSL SKGQDRGNSV SIQTVKSREK STWVLQDSCT NSYESVVVYA PVDINTTQMV IAGHDPSNIQ ILPCGFSIIP DGVESRQLVI SSAQEADRNT
701: QGGSLLTMAL QTLVNQSPAA KLNMESVESV TNLVSVTLHN IKRCLQIEDC

Best Arabidopsis Sequence Match ( AT1G79840.1 )
(BLAST)

001: MSMAVDMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVV DDEDRTVEMS SENSGPTRSR SEEDLEGEDH DDEEEEEEDG AAGNKGTNKR
101: KRKKYHRHTT DQIRHMEALF KETPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKA ELEKLREENK AMRESFSKAN SSCPNCGGGP
201: DDLHLENSKL KAELDKLRAA LGRTPYPLQA SCSDDQEHRL GSLDFYTGVF ALEKSRIAEI SNRATLELQK MATSGEPMWL RSVETGREIL NYDEYLKEFP
301: QAQASSFPGR KTIEASRDAG IVFMDAHKLA QSFMDVGQWK ETFACLISKA ATVDVIRQGE GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLSPE
401: KWAIVDVSVS VEDSNTEKEA SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL DVSASTVQPL FRSLVNTGLA FGARHWVATL QLHCERLVFF MATNVPTKDS
501: LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWTKITT KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPALL FDFFRDEARR HEWDALSNGA
601: HVQSIANLSK GQDRGNSVAI QTVKSREKSI WVLQDSSTNS YESVVVYAPV DINTTQLVLA GHDPSNIQIL PSGFSIIPDG VESRPLVITS TQDDRNSQGG
701: SLLTLALQTL INPSPAAKLN MESVESVTNL VSVTLHNIKR SLQIEDC

Arabidopsis Description

GL2HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.