Factsheet for Bra000807.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90879	Canola	nucleus	94.14	78.49
CDY21319	Canola	nucleus	93.97	78.35
Bra029527.1-P	Field mustard	nucleus	93.3	74.77
AT4G04890.1	Thale cress	nucleus	91.29	73.35
Bra038757.1-P	Field mustard	nucleus	80.9	66.62
Bra020872.1-P	Field mustard	nucleus	82.91	66.18
Bra013556.1-P	Field mustard	nucleus	72.7	62.9
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	69.51	62.88
KRH27601	Soybean	nucleus	76.55	62.43
KRH77881	Soybean	nucleus	75.88	61.97
Bra000960.1-P	Field mustard	extracellular	12.06	61.54
Bra032478.1-P	Field mustard	nucleus	70.35	58.41
Os04t0627000-02	Rice	cytosol, peroxisome	57.29	58.36
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	70.85	58.26
Bra015401.1-P	Field mustard	nucleus	69.85	57.92
GSMUA_Achr10P...	Banana	nucleus	67.5	56.36
EES11464	Sorghum	nucleus	74.04	56.02
EES13460	Sorghum	mitochondrion, nucleus	72.03	55.06
TraesCS2D01G473700.1	Wheat	nucleus	71.52	55.03
TraesCS2B01G497500.1	Wheat	nucleus	71.36	54.97
TraesCS2A01G474000.1	Wheat	nucleus	71.19	54.7
Zm00001d049443_P005	Maize	nucleus	72.19	54.15
Zm00001d002234_P003	Maize	nucleus	71.69	53.9
GSMUA_Achr11P...	Banana	plastid	70.52	53.36
Os08t0136100-01	Rice	nucleus	69.51	52.87
Zm00001d026351_P003	Maize	nucleus	73.2	51.78
Zm00001d024701_P001	Maize	nucleus	68.51	51.32
EES14500	Sorghum	nucleus	68.84	50.49
Zm00001d000247_P001	Maize	plasma membrane	60.47	50.21
TraesCS7A01G308400.1	Wheat	nucleus	66.67	50.0
TraesCS7D01G305200.1	Wheat	nucleus	66.5	49.87
TraesCS7B01G208600.1	Wheat	nucleus	66.5	49.75
Bra005588.1-P	Field mustard	nucleus	49.08	41.62
Os08t0187500-01	Rice	nucleus	22.61	41.41
Bra037355.1-P	Field mustard	nucleus	53.43	40.38
Bra028295.1-P	Field mustard	nucleus	45.39	39.74
Bra021779.1-P	Field mustard	nucleus	48.41	39.7
Bra003439.1-P	Field mustard	nucleus	51.59	39.24
Bra016578.1-P	Field mustard	nucleus	44.39	38.74
Bra003846.1-P	Field mustard	nucleus	45.06	38.16
Bra004934.1-P	Field mustard	nucleus	50.08	38.04
Bra025938.1-P	Field mustard	nucleus	43.89	37.75
Bra015996.1-P	Field mustard	nucleus	45.06	37.52
Bra017519.1-P	Field mustard	nucleus	44.39	32.48
Bra003535.1-P	Field mustard	nucleus	40.37	32.13
Bra021035.1-P	Field mustard	nucleus	39.2	31.88
Bra023611.1-P	Field mustard	nucleus	36.18	30.64
Bra024984.1-P	Field mustard	nucleus	40.7	30.57
Bra032003.1-P	Field mustard	nucleus	34.67	30.04
Bra020066.1-P	Field mustard	nucleus	34.0	29.77
Bra003213.1-P	Field mustard	nucleus	34.67	29.15
Bra021363.1-P	Field mustard	nucleus	35.01	28.75
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	34.34	28.35
Bra013898.1-P	Field mustard	nucleus	26.97	25.84
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	11.22	23.43

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EnsemblPlantsGene:Bra000807	EnsemblPlants:Bra000807.1	EnsemblPlants:Bra000807.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:M4C9C8	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI00025404B4	SEG:seg

Description

AT4G04890 (E=6e-197) PDF2 | PDF2 (PROTODERMAL FACTOR 2); DNA binding / transcription factor

Coordinates

chrA03:-:13269748..13273793

Molecular Weight (calculated)

65726.0 Da

IEP (calculated)

5.988

GRAVY (calculated)

-0.513

Length

597 amino acids

Sequence
(BLAST)

001: MYHPNMFESH HMFDMTTKST SDNDFGITGS REDDFETKSG TEVTTENPSG EELQDPNQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLG
101: LEPLQIKFWF QNKRTQMKAQ HERHDNQILK SDNDKLRAEN NRYKEALSNA TCPSCGGPAA TGEMSFDEQH LRIENARLRE ENQWSCVFSG IVSRALTLEV
201: LSTGVAGNYN GALQVMTAEF QVPSPLVPTR ENYFVRYCKQ HSDGSWAVVD VSLDSLRPNP ISRTRRRPSG CLIQELPNGY SKVTWVEHMG VDDRSVHTMY
301: KPLVHSGLAF GARRWVSTLE RQCERLASSM ASNIPASDLS GPYNFVISDN ESRREEEHVE ASGKYVIGAS TAHAWTTMSS TGSDDVRVMT RKSMDDPGRP
401: PGIVLSAATS FWIPVAPKRV FDFLRDENSR SEWDILSNGG MVQEMAHIAN GREPGNCVSL LRVNSGNSSQ SNMLILQESC TDASGSYVIY APVDIVAMNV
501: VLSGGDPDYV ALLPSGFAIL PDGSVGGGGD GNQEVVSSST ASESCGSLLT VAFQILVDSV PTAKLSLGSV ATVNSLIKCT VERIKAAVAG DRGGGGP

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.