CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049443_P005	Maize	nucleus	95.9	94.1
Zm00001d000247_P001	Maize	plasma membrane	85.15	92.49
EES11464	Sorghum	nucleus	81.18	80.35
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	66.84	79.09
VIT_10s0116g00680.t01	Wine grape	nucleus	71.19	76.58
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	70.93	76.31
PGSC0003DMT400061859	Potato	nucleus	66.97	75.91
VIT_12s0059g02310.t01	Wine grape	nucleus	72.34	74.64
Solyc03g031760.2.1	Tomato	cytosol	59.67	74.09
KRH13175	Soybean	cytosol	16.65	73.45
KRH56105	Soybean	nucleus	68.5	73.39
PGSC0003DMT400029291	Potato	nucleus	64.79	72.6
CDX90879	Canola	nucleus	66.33	72.35
CDY21319	Canola	nucleus	66.2	72.21
Solyc10g005330.2.1	Tomato	nucleus	65.81	72.19
CDX98703	Canola	nucleus	64.15	72.09
CDX94054	Canola	nucleus	64.15	72.09
Bra000807.1-P	Field mustard	nucleus	55.06	72.03
KRH25398	Soybean	plastid	70.17	72.01
KRH27601	Soybean	nucleus	67.22	71.72
CDY16639	Canola	nucleus	67.09	71.49
CDX94586	Canola	nucleus	66.97	71.45
KRH22554	Soybean	nucleus	71.32	71.32
CDY27417	Canola	nucleus	65.17	71.29
KRH77881	Soybean	nucleus	66.71	71.27
KRH26803	Soybean	nucleus	71.06	71.06
GSMUA_Achr11P...	Banana	plastid	71.7	70.98
AT4G04890.1	Thale cress	nucleus	67.48	70.93
CDX76399	Canola	nucleus	64.92	70.91
Bra029527.1-P	Field mustard	nucleus	67.61	70.87
AT1G05230.5	Thale cress	nucleus	65.17	70.6
GSMUA_Achr10P...	Banana	nucleus	64.02	69.93
Bra015401.1-P	Field mustard	nucleus	64.4	69.86
AT4G21750.3	Thale cress	nucleus	68.12	69.82
Bra038757.1-P	Field mustard	nucleus	64.79	69.79
CDY06167	Canola	nucleus	64.28	69.72
PGSC0003DMT400005277	Potato	nucleus	65.3	69.58
Bra032478.1-P	Field mustard	nucleus	64.02	69.54
CDY66622	Canola	nucleus	65.04	69.49
CDX79091	Canola	nucleus	65.3	68.36
Bra020872.1-P	Field mustard	nucleus	65.43	68.32
Solyc02g080260.2.1	Tomato	nucleus	65.43	68.04
CDY10041	Canola	nucleus	64.53	67.47
Bra013556.1-P	Field mustard	nucleus	58.64	66.38
EES14500	Sorghum	nucleus	66.84	64.13
CDY49515	Canola	plasma membrane	65.3	62.89
CDY23096	Canola	nucleus	10.37	61.36
CDY46842	Canola	nucleus	65.17	61.33
CDY71572	Canola	nucleus	30.22	60.05
KRG91238	Soybean	nucleus	55.19	58.96
KRH35579	Soybean	nucleus	54.55	54.76
EES05874	Sorghum	nucleus	44.17	48.8
EER89393	Sorghum	nucleus	42.89	47.86
EES02604	Sorghum	nucleus	49.94	47.85
VIT_19s0177g00240.t01	Wine grape	cytosol, mitochondrion	14.21	46.84
KXG26935	Sorghum	nucleus	46.48	45.26
EER99222	Sorghum	nucleus	47.76	42.78
PGSC0003DMT400037397	Potato	cytosol	24.33	38.7
KRH22254	Soybean	cytosol	26.38	38.5
KXG38837	Sorghum	nucleus	42.51	37.64
Solyc10g006420.2.1	Tomato	cytosol	25.1	37.19
KRH27078	Soybean	extracellular, golgi, peroxisome	14.98	35.45
OQU87592	Sorghum	nucleus	30.86	33.9
EER98409	Sorghum	nucleus	29.83	31.92
OQU81266	Sorghum	nucleus	29.83	30.3
OQU81174	Sorghum	nucleus	28.55	30.22
EES01587	Sorghum	nucleus	29.19	30.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	EntrezGene:8071117	UniProt:C5YI05	ncoils:Coil
EnsemblPlants:EES13460	ProteinID:EES13460	ProteinID:EES13460.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
InterPro:IPR023393	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF513	SMART:SM00234	SMART:SM00389	EnsemblPlantsGene:SORBI_3007G065300	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	unigene:Sbi.12320	UniParc:UPI0001A875CA	RefSeq:XP_002443965.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:6922405..6928221

Molecular Weight (calculated)

84373.2 Da

IEP (calculated)

5.932

GRAVY (calculated)

-0.272

Length

781 amino acids

Sequence
(BLAST)

001: MTPARRMPAM IGRNGMAFGS SSALSLSQAD LLDSHHLQQA FQQQLFDQIP ATAVDSSDNI IHGRSDTLVD EFESKSCSEN PDGTSGDDGQ EDPNQRPNKK
101: KRYHRHTQHQ IQEMEAFFKE CPHPDDKQRK ELSRELGLEP LQVKFWFQNK RTQMKNQHER QENAQLRAEN DKLRAENMRY KEALGTASCP SCGGPAALGE
201: MSFDEHHLRL ENARLRDEID RISGIAAKHV GKPMVSFPVL SSPLAAAAAR SPLDLAGAYG VQPGGLGADH LFGVGAGAGD LLRSVSTGQL DADKPMIVEL
301: AVAAMDELLR MARLDAPLWG GGVAGVQLDE EEYGRMFPGG LGPRQYGLRP EASRDNAVVI MTRDSLVEIL MDANRFAAVF SSIVSRASTH EVLSTGVAGS
401: YNGALQVMSM EFQVPSPLVP TRESYFVRYC KNNPDGTWAV VDVSLDSLRP SPVMKCRRRP SGCLIQEMPN GYSKVTWVEH VEVDDRSVHN LYRPLVNSGL
501: AFGAKRWVGT LDRQCERLAS AMASNIPNGD LGVITSIEGR KSMLKLAERM VASFCGGVTA SAAHQWTTLS GSGAEDVRVM TRKSVDDPGR PPGIVLNAAT
601: SFWLPVPPKR VFDFLRDETS RSEWDILSNG GAVQEMAHIA NGRDHGNCVS LLRVNSANSN QSNMLILQES CTDASGSYVV YAPVDVVAMN VVLNGGDPDY
701: VALLPSGFAI LPDGPPGMAP HGEGAALETG GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN SLIACTVERI KAAVCVEGNP Q

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.