Factsheet for VIT_10s0116g00680.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061859	Potato	nucleus	82.09	86.5
Solyc03g031760.2.1	Tomato	cytosol	73.0	84.26
PGSC0003DMT400029291	Potato	nucleus	78.37	81.64
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	73.97	81.36
Solyc10g005330.2.1	Tomato	nucleus	79.61	81.18
VIT_12s0059g02310.t01	Wine grape	nucleus	83.06	79.66
PGSC0003DMT400005277	Potato	nucleus	79.06	78.31
Os04t0627000-02	Rice	cytosol, peroxisome	62.53	77.47
Solyc02g080260.2.1	Tomato	nucleus	78.51	75.9
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	74.52	74.52
EES11464	Sorghum	nucleus	78.37	72.12
GSMUA_Achr10P...	Banana	nucleus	70.25	71.33
EES13460	Sorghum	mitochondrion, nucleus	76.58	71.19
Zm00001d049443_P005	Maize	nucleus	76.72	69.97
GSMUA_Achr11P...	Banana	plastid	75.34	69.33
TraesCS2B01G497500.1	Wheat	nucleus	73.83	69.16
TraesCS2D01G473700.1	Wheat	nucleus	73.83	69.07
Zm00001d002234_P003	Maize	nucleus	75.48	69.02
TraesCS2A01G474000.1	Wheat	nucleus	73.83	68.98
Os08t0136100-01	Rice	nucleus	74.1	68.53
Zm00001d000247_P001	Maize	plasma membrane	66.12	66.76
Zm00001d026351_P003	Maize	nucleus	77.27	66.47
TraesCS7D01G305200.1	Wheat	nucleus	72.31	65.95
TraesCS7A01G308400.1	Wheat	nucleus	72.18	65.83
TraesCS7B01G208600.1	Wheat	nucleus	72.04	65.54
Zm00001d024701_P001	Maize	nucleus	70.94	64.62
EES14500	Sorghum	nucleus	71.49	63.76
VIT_15s0048g02000.t01	Wine grape	nucleus	58.68	52.53
VIT_17s0053g00780.t01	Wine grape	nucleus	49.72	50.85
Os08t0187500-01	Rice	nucleus	21.63	48.16
VIT_16s0100g00670.t01	Wine grape	nucleus	50.41	46.74
VIT_09s0002g04340.t01	Wine grape	nucleus	47.11	45.6
VIT_19s0177g00240.t01	Wine grape	cytosol, mitochondrion	14.88	45.57
VIT_02s0012g02030.t01	Wine grape	nucleus	48.9	44.49
VIT_04s0079g00480.t01	Wine grape	nucleus	42.7	43.42
VIT_09s0018g02100.t01	Wine grape	nucleus	4.41	41.56
VIT_13s0067g01580.t01	Wine grape	nucleus	5.1	33.04

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100264009	wikigene:100264009	MapMan:15.5.3.3	EMBL:AM483951	ProteinID:CAN62139
ProteinID:CAN62139.1	ProteinID:CBI23181	ProteinID:CBI23181.3	ncoils:Coil	UniProt:E0CVM0	EMBL:FN595248
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	EntrezGene:LOC100264009	wikigene:LOC100264009	PFAM:PF00046
PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI00015CCC4A
ArrayExpress:VIT_10s0116g00680	EnsemblPlantsGene:VIT_10s0116g00680	EnsemblPlants:VIT_10s0116g00680.t01	unigene:Vvi.19442	RefSeq:XP_002266688	RefSeq:XP_002266688.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:300617..304777

Molecular Weight (calculated)

79669.9 Da

IEP (calculated)

6.290

GRAVY (calculated)

-0.310

Length

726 amino acids

Sequence
(BLAST)

001: MFQPNMFDSH HHLLDMPHKT PESEMGKIRD EEFESKSGTE NMDAPSGDDQ DPNQRPKKKR YHRHTQHQIQ EMEAFFKECP HPDDKQRKEL SRELGLEPLQ
101: VKFWFQNKRT QMKAQHERHE NSNLRAENEK LRAENIRYKE ALSNATCPHC GGPASIGEMS FDEQHLRIEN ARLRDEIDRI SGIAAKYVGK PMVSYPHLST
201: HTSSRSLDLG VGNFGAQSGI VGDMYGGGDL LRSVSLPTEA DKPMIVELAV AAMEELIRMA QAGEPLWIPT SDNSTEILSE DEYLRTFPRG IGPKPLGLKS
301: EASRETAVVI MNHISLVEIL MDVNQWSSVF SGIVSRAMTL EVLSTGVAGN YNGALQVMTA EFQVPSPLVP TRENYFVRYC KHHPDGTWAV VDVSLDNLRS
401: GPITRNRRRP SGCLIQELPN GYSKVIWVEH VEVDDRAVHN IYRPLVNSGL AFGAKRWVAT LDRQCERLAS AMASNIPAGD VGVITSPEGR KSMLKLAERM
501: VMSFCAGVGA STTHTWTTLS GSGADDVRVM TRKSMDDPGR PPGIVLSAAT SFWIPVPPKR VFDFLRAENS RSEWDILSNG GLVQEMAHIA NGRDPGNCVS
601: LLRVNSANSS QSNMLILQES CTDPTGSYVI YAPVDIVAMN VVLSGGDPDY VALLPSGFAI LPDGAVLHGG GILDVGSGGS LLTVAFQILV DSAPTAKLSL
701: GSVATVNSLI KCTVERIKAA VSCENT

Best Arabidopsis Sequence Match ( AT4G21750.2 )
(BLAST)

001: MYHPNMFESH HHMFDMTPKN SENDLGITGS HEEDFETKSG AEVTMENPLE EELQDPNQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELS
101: LEPLQVKFWF QNKRTQMKAQ HERHENQILK SENDKLRAEN NRYKDALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLMAN
201: SSSFPQLSSS HHIPSRSLDL EVGNFGNNNN SHTGFVGEMF GSSDILRSVS IPSEADKPMI VELAVAAMEE LVRMAQTGDP LWVSSDNSVE ILNEEEYFRT
301: FPRGIGPKPI GLRSEASRES TVVIMNHINL IEILMDVNQW SSVFCGIVSR ALTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRENYF VRYCKQHSDG
401: IWAVVDVSLD SLRPSPITRS RRRPSGCLIQ ELQNGYSKVT WVEHIEVDDR SVHNMYKPLV NTGLAFGAKR WVATLDRQCE RLASSMASNI PACDLSVITS
501: PEGRKSMLKL AERMVMSFCT GVGASTAHAW TTLSTTGSDD VRVMTRKSMD DPGRPPGIVL SAATSFWIPV APKRVFDFLR DENSRSEWDI LSNGGLVQEM
601: AHIANGRDPG NSVSLLRVNS GNSGQSNMLI LQESCTDASG SYVIYAPVDI IAMNVVLSGG DPDYVALLPS GFAILPDGSA RGGGGSANAS AGAGVEGGGE
701: GNNLEVVTTT GSCGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKAALACD GA

Arabidopsis Description

ATML1ATML1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZ61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.