Factsheet for VIT_02s0012g02030.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g02790.t01
VIT_17s0053g00780.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17710.1	VIT_17s0053g00780.t01	AT1G73360.1	21798944
AT4G17710.1	VIT_08s0007g02790.t01	AT3G11590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74360	Soybean	nucleus	74.06	74.9
KRH39579	Soybean	nucleus	74.69	74.5
PGSC0003DMT400006155	Potato	nucleus	69.67	72.77
Solyc08g076370.2.1	Tomato	nucleus	75.06	71.14
GSMUA_Achr5P14100_001	Banana	nucleus	64.41	67.99
GSMUA_Achr4P19010_001	Banana	nucleus	64.66	64.42
AT5G46880.3	Thale cress	nucleus	62.28	60.17
CDY43458	Canola	nucleus	60.03	58.99
Bra017519.1-P	Field mustard	nucleus	60.28	58.95
CDY03177	Canola	nucleus	60.53	58.47
Bra024984.1-P	Field mustard	nucleus	57.89	58.11
CDY33492	Canola	nucleus	57.89	58.04
CDX77711	Canola	nucleus	59.65	57.84
Os10t0575600-01	Rice	nucleus	63.16	57.14
KXG38837	Sorghum	nucleus	62.53	56.58
TraesCS1D01G197300.1	Wheat	nucleus	62.53	56.51
HORVU1Hr1G050620.2	Barley	nucleus	62.16	56.05
TraesCS1A01G193400.1	Wheat	nucleus, plastid	61.15	55.9
TraesCS1B01G208400.1	Wheat	nucleus	62.16	55.73
Zm00001d030069_P004	Maize	nucleus	61.28	55.32
CDY08866	Canola	nucleus	49.25	53.4
AT4G17710.1	Thale cress	nucleus	47.37	53.31
Bra021035.1-P	Field mustard	nucleus	48.62	52.86
CDX76559	Canola	nucleus	48.62	52.86
VIT_17s0053g00780.t01	Wine grape	nucleus	46.62	52.39
VIT_10s0116g00680.t01	Wine grape	nucleus	44.49	48.9
VIT_12s0059g02310.t01	Wine grape	nucleus	44.86	47.29
VIT_15s0048g02000.t01	Wine grape	nucleus	44.24	43.53
VIT_04s0079g00480.t01	Wine grape	nucleus	37.72	42.16
VIT_09s0018g02100.t01	Wine grape	nucleus	4.01	41.56
VIT_16s0100g00670.t01	Wine grape	nucleus	39.72	40.49
VIT_09s0002g04340.t01	Wine grape	nucleus	37.22	39.6
VIT_13s0067g01580.t01	Wine grape	nucleus	4.51	32.14
VIT_19s0177g00240.t01	Wine grape	cytosol, mitochondrion	9.52	32.07

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100253940	wikigene:100253940	MapMan:15.5.3.3	Gene3D:3.30.530.20	UniProt:A5AJ70
EMBL:AM427944	ProteinID:CAN60291	ProteinID:CAN60291.1	ProteinID:CBI33830	ProteinID:CBI33830.3	ncoils:Coil
EMBL:FN596247	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	EntrezGene:LOC100253940
wikigene:LOC100253940	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF267	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	TIGR:TC60235	UniParc:UPI000151EC62	ArrayExpress:VIT_02s0012g02030	EnsemblPlantsGene:VIT_02s0012g02030
EnsemblPlants:VIT_02s0012g02030.t01	unigene:Vvi.13505	RefSeq:XP_002277673	RefSeq:XP_002277673.1	RefSeq:XP_010663098.1	RefSeq:XP_010663102.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:8739817..8746008

Molecular Weight (calculated)

88381.3 Da

IEP (calculated)

5.910

GRAVY (calculated)

-0.337

Length

798 amino acids

Sequence
(BLAST)

001: MYGDCQVLTS MGGNVVSSDS LFSSPIRNPN FNFMSSMGGP FHAFSSIIPK EESGLLRGKD EMESGSGSEH IEGVSGNEQE NEQQPKKKRY HRHTARQIQE
101: MEALFKECPH PDDKQRMKLS QELGLKPRQV KFWFQNRRTQ MKAQQDRSDN VILRAENENL KNENYRLQAA LRSVICPNCG GPAMLGEIAF DEQQLRIENA
201: RLKEELDRVC CLASRYGGRA IQAIGPPPPL LAPSLDLDMS IYARNFPEPM ANCTDMIPVP LMPESSHFPE GGLVLEEEKS LALELAISSV DELVKMCQLG
301: EPLWIRSNEN GKEVINVEEY GRMFPWPMNL KQHPGEFRTE ATRDSAVVIM NSINLVDAFL DAMKWMELFP SIISRAKTVQ VLSGVSGHAN GSLHLMYAEL
401: QVLSPLVPTR ETHFLRYCQQ NVDEGTWAIV DFPIDSFNDN LQPSVPRYRR RPSGCIIQDM PNGYSRVTWV EHADVEEKPV HHIFHHFVNS GMAFGATRWL
501: AVLQRQCERV ASLMARNISD LGVIPSPEAR KNLMNLAQRM IRTFSVNIST SSGQSWTALS DSSDDTVRIT TRKITEPGQP NGVILSAVST TWLPHPHYHV
601: FDLLRDERRR AQLDVLSNGN SLHEVAHIAN GSHPGNCISL LRINVASNSS QNVELMLQES CTDQSGSHVV YTTIDVDAIQ LAMSGEDPSC IPLLPMGFAI
701: VPVVPNNDCN IMTTTDDNPM PPSGDGNGHN SGCLLTVGLQ VLASTIPTAK LNLSSVTAIN NHLCNTVHQI NAALSSICPD NSSSMVGSST EPAAPPKQ

Best Arabidopsis Sequence Match ( AT5G46880.3 )
(BLAST)

001: MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK EEHGMMSMMM MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE
101: LHDDEQPPPA KKKRYHRHTN RQIQEMEALF KENPHPDDKQ RKRLSAELGL KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA ENDNLKSENC HLQAELRCLS
201: CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT GRPMQSMPPS QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD
301: QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK IGGEILCLNE EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD
401: AFLNADKWSE MFCSIVARAK TVQIISSGVS GASGSLLLMF AELQVLSPLV PTREAYFLRY VEQNAETGNW AIVDFPIDSF HDQMQPMNTI THEYKRKPSG
501: CIIQDMPNGY SQVKWVEHVE VDEKHVHETF AEYVKSGMAF GANRWLDVLQ RQCERIASLM ARNITDLGVI SSAEARRNIM RLSQRLVKTF CVNISTAYGQ
601: SWTALSETTK DTVRITTRKM CEPGQPTGVV LCAVSTTWLP FSHHQVFDLI RDQHHQSLLE VLFNGNSPHE VAHIANGSHP GNCISLLRIN VASNSWHNVE
701: LMLQESCIDN SGSLIVYSTV DVDSIQQAMN GEDSSNIPIL PLGFSIVPVN PPEGISVNSH SPPSCLLTVG IQVLASNVPT AKPNLSTVTT INNHLCATVN
801: QITSALSNTI TPVIASSADV SNQEVS

Arabidopsis Description

HDG5Homeobox-leucine zipper protein HDG5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.