Factsheet for Bra017519.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43458	Canola	nucleus	97.06	97.54
AT5G46880.3	Thale cress	nucleus	87.01	85.96
Bra024984.1-P	Field mustard	nucleus	83.46	85.66
VIT_02s0012g02030.t01	Wine grape	nucleus	58.95	60.28
Bra021035.1-P	Field mustard	nucleus	53.55	59.54
KRH74360	Soybean	nucleus	56.37	58.3
KRH39579	Soybean	nucleus	56.37	57.5
PGSC0003DMT400006155	Potato	nucleus	52.7	56.28
GSMUA_Achr5P14100_001	Banana	nucleus	50.74	54.76
Solyc08g076370.2.1	Tomato	nucleus	56.0	54.28
GSMUA_Achr4P19010_001	Banana	nucleus	51.47	52.43
TraesCS1A01G193400.1	Wheat	nucleus, plastid	50.98	47.65
TraesCS1D01G197300.1	Wheat	nucleus	50.98	47.11
HORVU1Hr1G050620.2	Barley	nucleus	50.86	46.89
TraesCS1B01G208400.1	Wheat	nucleus	50.86	46.63
Os10t0575600-01	Rice	nucleus	50.37	46.6
KXG38837	Sorghum	nucleus	50.0	46.26
Zm00001d030069_P004	Maize	nucleus	49.75	45.93
Bra000807.1-P	Field mustard	nucleus	32.48	44.39
Bra015401.1-P	Field mustard	nucleus	38.6	43.75
Bra029527.1-P	Field mustard	nucleus	39.34	43.09
Bra032478.1-P	Field mustard	nucleus	37.62	42.7
Bra003846.1-P	Field mustard	nucleus	36.64	42.41
Bra015996.1-P	Field mustard	nucleus	36.76	41.84
Bra020872.1-P	Field mustard	nucleus	38.24	41.71
Bra038757.1-P	Field mustard	nucleus	36.76	41.38
Bra016578.1-P	Field mustard	nucleus	33.82	40.35
Bra013556.1-P	Field mustard	nucleus	33.46	39.57
Bra000960.1-P	Field mustard	extracellular	5.64	39.32
Bra025938.1-P	Field mustard	nucleus	33.33	39.19
Bra037355.1-P	Field mustard	nucleus	36.15	37.34
Bra004934.1-P	Field mustard	nucleus	35.42	36.77
Bra003439.1-P	Field mustard	nucleus	35.29	36.69
Bra005588.1-P	Field mustard	nucleus	31.13	36.08
Bra028295.1-P	Field mustard	nucleus	30.15	36.07
Bra021779.1-P	Field mustard	nucleus	31.37	35.16
Bra003535.1-P	Field mustard	nucleus	30.76	33.47
Bra032003.1-P	Field mustard	nucleus	26.72	31.64
Bra020066.1-P	Field mustard	nucleus	26.1	31.23
Bra023611.1-P	Field mustard	nucleus	26.84	31.06
Bra003213.1-P	Field mustard	nucleus	26.59	30.56
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	26.59	30.01
Bra021363.1-P	Field mustard	nucleus	25.0	28.06
Bra013898.1-P	Field mustard	nucleus	20.71	27.13
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	7.11	20.28

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EnsemblPlantsGene:Bra017519	EnsemblPlants:Bra017519.1	EnsemblPlants:Bra017519.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:M4DLY8	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF267	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0002542446	SEG:seg

Description

AT5G46880 (E=0.0) HB-7, HDG5 | HB-7 (HOMEOBOX-7); DNA binding / transcription factor

Coordinates

chrA09:-:15983816..15988194

Molecular Weight (calculated)

90933.2 Da

IEP (calculated)

5.416

GRAVY (calculated)

-0.357

Length

816 amino acids

Sequence
(BLAST)

001: MTSDNRFASP PPPASSSPAT IQNPNFNFIP FNSFSSIIPK EEHGMMSMSM MMMMGDEAVE EMMENGSMGG SFGSGSEQAE DPKSGTEFDV NELRDDEQPP
101: PAKKKRYHRH TDRQIQEMEA LFKENPHPED KQRQRLSHEL GLKPRQVKFW FQNRRTQMKA QQDRAENVML RADNDNLKLE NSQLQAELRC LSCPSCGGPT
201: VLGDIPFNEL HIENCRLREE LDRLCCIASR YTDRPMQPMP PSQPLINPAS ELPHHQPSLE LDISAYAGNY PDHPCSDLMS LPPQDSACFF PTQTINNSSN
301: NNMLLADEEK VMAMEFAVSC VQELTKMCDT EEPLWVNKKS DKIGGETLCL NEEEYMRLFP WPMEKNNNNG DFRREASKAN AVVIMNSITL VNAFLNADKW
401: SEMFCSIVAR VKTVQIISSG VSGASGSLML MYAELQVLSP LVPTREAYFL RYVEQNSENG NWAIVDFPID SFHDQNSPHE YKRKPSGCII QDMPNGYSKV
501: KWVEHVEVVE RHVHETFAEY VKSGMAFGAS RWVDVLERQC ERMASLMARN ITDLGVIRSA EARRNMMRLS QRMMKTFCVN ISTSYGQSWT ALSETAKDTV
601: RITTRKVCEP GQPTGVVLVA VSTTWLPFSH FKVFDLLRDQ HHHSLLEVLF SGNSSHEVAH IANGSHPGNC ISLLRVNVAS NSWHNVELML QESCIDNSGG
701: LIVYSTVGVD SIQHVMNGED PSNVPVLPLG FSVVPVNPPG EVEGISVNSI PPPSCLLTVG IQVLASNVPT AKPNLSTVTT INNHLCSIVN QITSVLSSTI
801: SPTIASSAAA AKQDVI

Best Arabidopsis Sequence Match ( AT5G46880.3 )
(BLAST)

001: MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK EEHGMMSMMM MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE
101: LHDDEQPPPA KKKRYHRHTN RQIQEMEALF KENPHPDDKQ RKRLSAELGL KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA ENDNLKSENC HLQAELRCLS
201: CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT GRPMQSMPPS QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD
301: QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK IGGEILCLNE EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD
401: AFLNADKWSE MFCSIVARAK TVQIISSGVS GASGSLLLMF AELQVLSPLV PTREAYFLRY VEQNAETGNW AIVDFPIDSF HDQMQPMNTI THEYKRKPSG
501: CIIQDMPNGY SQVKWVEHVE VDEKHVHETF AEYVKSGMAF GANRWLDVLQ RQCERIASLM ARNITDLGVI SSAEARRNIM RLSQRLVKTF CVNISTAYGQ
601: SWTALSETTK DTVRITTRKM CEPGQPTGVV LCAVSTTWLP FSHHQVFDLI RDQHHQSLLE VLFNGNSPHE VAHIANGSHP GNCISLLRIN VASNSWHNVE
701: LMLQESCIDN SGSLIVYSTV DVDSIQQAMN GEDSSNIPIL PLGFSIVPVN PPEGISVNSH SPPSCLLTVG IQVLASNVPT AKPNLSTVTT INNHLCATVN
801: QITSALSNTI TPVIASSADV SNQEVS

Arabidopsis Description

HDG5Homeobox-leucine zipper protein HDG5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.