Factsheet for Bra003213.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53691	Canola	nucleus	99.86	99.86
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	81.83	80.36
Bra023611.1-P	Field mustard	nucleus	68.59	69.08
AT1G34650.1	Thale cress	nucleus	60.14	60.31
AT5G17320.1	Thale cress	nucleus	60.28	59.61
Os06t0208100-00	Rice	nucleus	10.42	57.36
Bra032003.1-P	Field mustard	nucleus	45.63	47.02
Bra021363.1-P	Field mustard	nucleus	47.32	46.22
Bra020066.1-P	Field mustard	nucleus	44.23	46.04
Solyc09g057530.1.1	Tomato	cytosol	8.31	43.07
VIT_04s0079g00480.t01	Wine grape	nucleus	42.25	42.02
Solyc09g066070.2.1	Tomato	cytosol	24.79	40.84
PGSC0003DMT400051268	Potato	cytosol	28.31	40.28
Zm00001d018225_P001	Maize	nucleus	38.45	39.45
PGSC0003DMT400085057	Potato	cytosol	26.48	39.33
PGSC0003DMT400038820	Potato	extracellular	20.14	39.29
TraesCS6D01G304300.1	Wheat	nucleus	37.75	39.12
TraesCS6A01G324500.1	Wheat	nucleus	37.75	39.12
Solyc07g026560.1.1	Tomato	cytosol	25.92	38.9
Zm00001d052133_P001	Maize	nucleus	38.17	38.83
KRH11810	Soybean	nucleus	38.59	38.43
KRH36827	Soybean	nucleus	38.17	38.22
EES05874	Sorghum	nucleus	38.03	38.19
Zm00001d044973_P001	Maize	nucleus	37.04	38.17
TraesCS6B01G354900.3	Wheat	nucleus	37.46	38.16
PGSC0003DMT400034503	Potato	cytosol, nucleus	36.48	38.03
Zm00001d037140_P004	Maize	nucleus	36.76	37.99
Solyc09g060130.1.1	Tomato	cytosol	23.66	37.84
Solyc10g018030.1.1	Tomato	cytosol	21.97	37.77
GSMUA_Achr10P...	Banana	nucleus	37.75	37.69
Bra000960.1-P	Field mustard	extracellular	6.2	37.61
GSMUA_Achr6P05990_001	Banana	nucleus	31.83	37.48
Solyc09g057540.2.1	Tomato	cytosol	26.2	37.42
EER89393	Sorghum	nucleus	36.76	37.29
Solyc04g025490.1.1	Tomato	cytosol	12.68	37.19
Bra016578.1-P	Field mustard	nucleus	35.77	37.13
Solyc11g011940.1.1	Tomato	nucleus	37.46	37.1
Solyc07g037910.1.1	Tomato	cytosol	10.99	36.97
GSMUA_Achr10P...	Banana	nucleus	35.49	36.95
Solyc09g066030.1.1	Tomato	nucleus	37.61	36.93
GSMUA_Achr2P15140_001	Banana	nucleus	38.17	36.67
Solyc11g022420.1.1	Tomato	cytosol	24.65	36.53
Solyc05g015030.1.1	Tomato	cytosol	24.37	36.5
Solyc09g060140.2.1	Tomato	mitochondrion	18.87	36.41
Solyc09g060170.1.1	Tomato	cytosol	17.61	36.34
Bra025938.1-P	Field mustard	nucleus	35.49	36.31
PGSC0003DMT400051266	Potato	cytosol	19.86	36.25
Solyc09g066050.2.1	Tomato	cytosol	28.03	35.99
GSMUA_Achr7P11310_001	Banana	nucleus	37.04	35.73
KRH36826	Soybean	nucleus	35.63	35.48
Bra003846.1-P	Field mustard	nucleus	35.21	35.46
Solyc08g062510.2.1	Tomato	nucleus	32.54	35.38
Solyc10g018020.1.1	Tomato	extracellular	16.48	34.82
Solyc07g026570.1.1	Tomato	nucleus	6.9	34.75
Bra015996.1-P	Field mustard	nucleus	35.07	34.73
Bra000807.1-P	Field mustard	nucleus	29.15	34.67
TraesCS7A01G167900.1	Wheat	nucleus	34.37	33.66
TraesCS7B01G072700.1	Wheat	nucleus	34.08	33.15
PGSC0003DMT400036411	Potato	nucleus	24.51	33.14
TraesCS7D01G168700.1	Wheat	nucleus	34.08	33.06
Bra015401.1-P	Field mustard	nucleus	33.38	32.92
Bra029527.1-P	Field mustard	nucleus	34.51	32.89
Solyc10g018000.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	32.25	32.76
Bra020872.1-P	Field mustard	nucleus	34.51	32.75
Os06t0207966-00	Rice	plastid	12.11	32.7
Bra032478.1-P	Field mustard	nucleus	32.96	32.55
Solyc04g025480.1.1	Tomato	cytosol	30.0	32.52
Solyc08g062520.2.1	Tomato	cytosol	23.1	32.09
Bra038757.1-P	Field mustard	nucleus	32.54	31.86
Bra028295.1-P	Field mustard	nucleus	30.56	31.82
Bra005588.1-P	Field mustard	nucleus	30.42	30.68
Bra013556.1-P	Field mustard	nucleus	29.72	30.58
Bra037355.1-P	Field mustard	nucleus	33.94	30.51
Bra003439.1-P	Field mustard	nucleus	33.38	30.19
KRH42428	Soybean	nucleus	31.69	29.72
Bra004934.1-P	Field mustard	nucleus	32.39	29.26
Bra003535.1-P	Field mustard	nucleus	29.86	28.27
Bra021779.1-P	Field mustard	nucleus	28.73	28.02
Bra021035.1-P	Field mustard	nucleus	28.17	27.25
KRH42429	Soybean	cytosol	27.89	27.12
Bra024984.1-P	Field mustard	nucleus	30.0	26.79
Bra017519.1-P	Field mustard	nucleus	30.56	26.59
Bra013898.1-P	Field mustard	nucleus	20.99	23.92
TraesCSU01G150000.1	Wheat	nucleus	7.04	22.94
TraesCSU01G244000.1	Wheat	nucleus	5.92	20.39
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	7.75	19.23
HORVU3Hr1G022170.1	Barley	cytosol	1.97	11.76

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	EnsemblPlantsGene:Bra003213	EnsemblPlants:Bra003213.1	EnsemblPlants:Bra003213.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M4CG80	PFAM:PF00046	PFAM:PF01852
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF504	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI00025414B2	SEG:seg

Description

AT5G17320 (E=1e-232) HDG9 | HDG9 (HOMEODOMAIN GLABROUS 9); DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA07:-:11916795..11926306

Molecular Weight (calculated)

79724.5 Da

IEP (calculated)

6.868

GRAVY (calculated)

-0.331

Length

710 amino acids

Sequence
(BLAST)

001: MASGRDSSSS DEQETSLYTS DGDKRIYHRH SNHQIQKLEA YFKECPHPDD LQQLKLGEEL KLKQKQIKFW FQNKRTQAKV QNEKADNASL RTENMKIRRE
101: NEAMQEALNT VTCPPCGGPH PEQVDRKLYF QNLSANNAYL REERDKLSIL VYKTEGHPKP IVNALAYLHG PSLHASTSNN PHVTYGTSSN HLVEPPSLLR
201: ELYLREHISF AQPPQPRQLQ CSPPLSNMEK VMMTEAMVAA VTEVITLIQT EEPMWIKSSI DSRLVIDQEN YEKKFTKNSY FKTRIESSKE IAVIPLDAKN
301: LVNMLLDTEK WASLFSTIVS KAKTIHVLES SKLMYEQLHI LSPLLPPREF MILRCCQQLE EGLWVIADVS YHQVAFEFEF GTPACYKRPS GFLIQAMPNG
401: HSKVTWMEHV EVNDKVRAHR IYRDLLCGGF GYGARRWTAT LERMCERLSL YSVSDFPTTD DPGVVKTING RRRLMDLGER MLKNFAWILN MPEKSDFSQQ
501: SATNSSGVNI SVRVNKEAGQ PVGLIVCACS SLCLPLAPLQ VYNFLKNLEV RHQWDVLCHA SPVTEVARFV TGANNKNCVN ILQPSSAAEG GDLMIIQDSF
601: IDALGGMVVY APVDLSTAHA AVSGNVNPSD IPILPSGVVI SRDGRPSATA ELDGGCDNCK TLLTVAFQIL VTGPTIYEEL QMDKWTTSVD TLISSTITKV
701: KAMLNCHDGQ

Best Arabidopsis Sequence Match ( AT5G17320.1 )
(BLAST)

001: MDFTRDDNSS DERENDVDAN TNNRHEKKGY HRHTNEQIHR LETYFKECPH PDEFQRRLLG EELNLKPKQI KFWFQNKRTQ AKSHNEKADN AALRAENIKI
101: RRENESMEDA LNNVVCPPCG GRGPGREDQL RHLQKLRAQN AYLKDEYERV SNYLKQYGGH SMHNVEATPY LHGPSNHAST SKNRPALYGT SSNRLPEPSS
201: IFRGPYTRGN MNTTAPPQPR KPLEMQNFQP LSQLEKIAML EAAEKAVSEV LSLIQMDDTM WKKSSIDDRL VIDPGLYEKY FTKTNTNGRP ESSKDVVVVQ
301: MDAGNLIDIF LTAEKWARLF PTIVNEAKTI HVLDSVDHRG KTFSRVIYEQ LHILSPLVPP REFMILRTCQ QIEDNVWMIA DVSCHLPNIE FDLSFPICTK
401: RPSGVLIQAL PHGFSKVTWI EHVVVNDNRV RPHKLYRDLL YGGFGYGARR WTVTLERTCE RLIFSTSVPA LPNNDNPGVV QTIRGRNSVM HLGERMLRNF
501: AWMMKMVNKL DFSPQSETNN SGIRIGVRIN NEAGQPPGLI VCAGSSLSLP LPPVQVYDFL KNLEVRHQWD VLCHGNPATE AARFVTGSNP RNTVSFLEPS
601: IRDINTKLMI LQDSFKDALG GMVAYAPMDL NTACAAISGD IDPTTIPILP SGFMISRDGR PSEGEAEGGS YTLLTVAFQI LVSGPSYSPD TNLEVSATTV
701: NTLISSTVQR IKAMLKCE

Arabidopsis Description

HDG9Homeobox-leucine zipper protein HDG9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFI0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.