Factsheet for Bra003439.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014270.1-P
Bra018303.1-P
Bra018904.1-P
Bra021652.1-P
Bra022808.1-P
Bra025288.1-P
Bra030445.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61150.1	Bra014270.1-P	AT1G51355.1	21798944
AT3G61150.1	Bra018904.1-P	AT1G51355.1	21798944
AT3G61150.1	Bra030445.1-P	AT1G51355.1	21798944
AT3G61150.1	Bra018303.1-P	AT2G30590.1	21798944
AT3G61150.1	Bra021652.1-P	AT2G30590.1	21798944
AT3G61150.1	Bra022808.1-P	AT2G30590.1	21798944
AT3G61150.1	Bra025288.1-P	AT3G27580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67855	Canola	nucleus	98.47	99.1
CDY45684	Canola	nucleus	97.58	97.7
AT3G61150.1	Thale cress	nucleus	89.68	87.13
Os09t0526300-00	Rice	nucleus	14.39	86.26
Bra000960.1-P	Field mustard	extracellular	11.72	78.63
Bra004934.1-P	Field mustard	nucleus	68.53	68.45
VIT_15s0048g02000.t01	Wine grape	nucleus	69.04	66.83
Solyc01g091630.2.1	Tomato	nucleus	69.17	66.14
PGSC0003DMT400071377	Potato	nucleus	69.17	66.14
KRH48236	Soybean	nucleus	69.04	65.38
KRH00641	Soybean	nucleus	68.41	65.33
KRH40539	Soybean	nucleus	67.9	65.0
KRH65144	Soybean	nucleus	68.79	64.59
GSMUA_Achr1P18760_001	Banana	nucleus	61.27	63.62
Bra037355.1-P	Field mustard	nucleus	63.82	63.42
PGSC0003DMT400019986	Potato	nucleus	63.69	61.8
GSMUA_Achr3P12410_001	Banana	nucleus	55.54	58.76
HORVU6Hr1G065300.3	Barley	nucleus	59.75	58.62
Os02t0674800-01	Rice	nucleus	60.0	58.58
TraesCS6D01G237000.1	Wheat	nucleus	59.87	58.46
Zm00001d040090_P002	Maize	nucleus	59.75	58.41
TraesCS6A01G255800.1	Wheat	nucleus	59.75	58.33
HORVU0Hr1G013510.1	Barley	cytosol	10.32	58.27
TraesCS6B01G269700.1	Wheat	nucleus	59.62	58.21
EES02604	Sorghum	nucleus	60.25	58.04
Os04t0569100-01	Rice	nucleus	56.82	55.34
EER99222	Sorghum	nucleus	58.6	52.75
TraesCS5D01G320600.1	Wheat	nucleus	56.18	51.94
Bra028295.1-P	Field mustard	nucleus	45.1	51.91
TraesCS5A01G314400.2	Wheat	nucleus	56.05	51.83
TraesCS5B01G315100.2	Wheat	nucleus	56.05	51.76
Zm00001d040091_P001	Maize	nucleus	17.2	51.72
HORVU5Hr1G080700.2	Barley	nucleus	56.18	51.7
Bra000807.1-P	Field mustard	nucleus	39.24	51.59
KXG26935	Sorghum	nucleus	52.61	51.5
Bra015401.1-P	Field mustard	nucleus	47.01	51.25
Bra029527.1-P	Field mustard	nucleus	48.28	50.87
Bra032478.1-P	Field mustard	nucleus	46.24	50.49
Bra038757.1-P	Field mustard	nucleus	46.5	50.34
Zm00001d021236_P004	Maize	nucleus	57.58	50.06
Bra020872.1-P	Field mustard	nucleus	46.88	49.2
TraesCS2D01G398600.1	Wheat	nucleus	48.92	48.98
TraesCS2B01G419200.1	Wheat	nucleus	48.92	48.92
HORVU2Hr1G095210.1	Barley	nucleus	47.9	48.21
Zm00001d026088_P002	Maize	nucleus	50.96	47.96
TraesCS2A01G401200.3	Wheat	nucleus	48.66	47.75
Bra013556.1-P	Field mustard	nucleus	41.27	46.96
Bra016578.1-P	Field mustard	nucleus	38.47	44.15
Bra003846.1-P	Field mustard	nucleus	39.36	43.83
Bra015996.1-P	Field mustard	nucleus	39.36	43.1
Bra025938.1-P	Field mustard	nucleus	37.07	41.93
Bra005588.1-P	Field mustard	nucleus	36.82	41.05
HORVU4Hr1G062510.2	Barley	cytosol	14.27	40.43
Bra021779.1-P	Field mustard	nucleus	37.45	40.38
HORVU7Hr1G036950.2	Barley	cytosol	9.17	39.34
Bra003535.1-P	Field mustard	nucleus	37.58	39.33
Bra017519.1-P	Field mustard	nucleus	36.69	35.29
Bra024984.1-P	Field mustard	nucleus	34.9	34.47
Bra023611.1-P	Field mustard	nucleus	30.7	34.18
Bra021035.1-P	Field mustard	nucleus	31.72	33.92
Bra013898.1-P	Field mustard	nucleus	26.88	33.87
Bra003213.1-P	Field mustard	nucleus	30.19	33.38
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	30.45	33.06
Bra032003.1-P	Field mustard	nucleus	28.66	32.66
HORVU3Hr1G108430.1	Barley	cytosol	13.76	32.43
Bra020066.1-P	Field mustard	nucleus	28.03	32.26
Bra021363.1-P	Field mustard	nucleus	29.17	31.5
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	8.03	22.03

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EnsemblPlantsGene:Bra003439	EnsemblPlants:Bra003439.1	EnsemblPlants:Bra003439.1-P	ncoils:Coil
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0048497	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:M4CGV6	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF487	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI00025417FF	SEG:seg

Description

AT3G61150 (E=0.0) HDG1, HD-GL2-1 | HDG1 (HOMEODOMAIN GLABROUS 1); DNA binding / transcription factor

Coordinates

chrA07:+:13182431..13186045

Molecular Weight (calculated)

85998.1 Da

IEP (calculated)

6.690

GRAVY (calculated)

-0.356

Length

785 amino acids

Sequence
(BLAST)

001: MNFNGYLGDG SSRDRISDVP YSDNFSFSAA ATMPHSRPFS SNGLSLGLQT NGVNGEAFET NVTRNKSRGG EDVESRSESD NAEAVSGDDL ETGDKPPRKK
101: KKRYHRHTAK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC SNCGGPAVLG
201: EVSMEEQHLR IENSRLKDEL DRVCALTGKF LGRSPSGSHH VPDSSLVLGV GVGSGGGFTL SSPSLPQASP RFEISNGTGL ATVNIQAPVS DFDQRSRYLD
301: LALAAMEELV KMAQRHEPLW VRSSDTGFVM LNKEEYDTSF SRVVGLKQDG FVSEASKETG NVIINSLALV ETLMDSERWA EMFPSMISRT STTEIISSGM
401: GGTRNGALHL MHAELQLLSP LVPVRQVSFL RFCKQHAEGV WAVVDVSIDS IREGSSSSCR RLPSGCLVQD MANGYSKVTW IEHTEYDENR IHRLYRPLLS
501: CGLAFGAQRW MAALQRQCEC LTILMSSTVS PSRSPTPISC NGRKSMLKLA KRMTDNFCGG VCASSLQKWS KLNVGNVDED VRIMTRKSVD DPGEPPGIVL
601: NAATSVWMPV SPKRLFDFLG NERLRSEWDI LSNGGPMQEM AHIAKGHDHS NSVSLLRATA INANQSSMLI LQETSIDAAG AVVVYAPVDI PAMQAVMNGG
701: DSAYVALLPS GFAILPSAPQ LSEERNGNGS GGCMEEGGSL LTVAFQILVN SLPTAKLTVE SVETVNNLIS CTVQKIKAAL HCDSN

Best Arabidopsis Sequence Match ( AT3G61150.1 )
(BLAST)

001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST

Arabidopsis Description

HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.