Factsheet for Bra018303.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra003251.1-P
Bra007269.1-P
Bra012987.1-P
Bra014671.1-P
Bra025315.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30590.1	Bra025315.1-P	AT3G27960.1	21798944
AT2G30590.1	Bra003251.1-P	AT3G56800.1	15733871
AT2G30590.1	Bra007269.1-P	AT3G56800.1	15733871
AT2G30590.1	Bra014671.1-P	AT3G56800.1	15733871
AT2G30590.1	Bra000638.1-P	AT4G08150.1	21798944
AT2G30590.1	Bra012987.1-P	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10749	Canola	nucleus	97.61	97.9
CDY47130	Canola	nucleus	95.22	93.0
Bra021652.1-P	Field mustard	nucleus	77.61	81.0
Bra022808.1-P	Field mustard	nucleus	77.31	76.63
AT2G30590.1	Thale cress	nucleus	80.0	70.53
GSMUA_Achr3P29310_001	Banana	nucleus	46.87	56.68
Bra013779.1-P	Field mustard	nucleus	23.28	54.55
GSMUA_Achr4P03660_001	Banana	nucleus	43.58	54.07
Bra001117.1-P	Field mustard	nucleus	47.16	49.53
Bra040396.1-P	Field mustard	nucleus	43.88	48.51
Bra010005.1-P	Field mustard	nucleus	45.67	44.87
Bra020617.1-P	Field mustard	nucleus	45.07	44.81
GSMUA_Achr9P21560_001	Banana	nucleus	48.66	44.66
Bra011282.1-P	Field mustard	nucleus	32.24	33.54
Bra032084.1-P	Field mustard	nucleus	32.24	33.23
Bra010231.1-P	Field mustard	nucleus	32.24	32.53
Bra023998.1-P	Field mustard	nucleus	31.64	32.32
Bra032174.1-P	Field mustard	nucleus	30.45	31.97
Bra019239.1-P	Field mustard	nucleus	32.24	31.03
Bra010839.1-P	Field mustard	nucleus	16.12	20.69
Bra032300.1-P	Field mustard	nucleus	15.82	20.23
Bra037368.1-P	Field mustard	nucleus	17.91	20.13
Bra007413.1-P	Field mustard	nucleus	14.93	18.52
Bra014556.1-P	Field mustard	nucleus	15.22	18.35
Bra022612.1-P	Field mustard	nucleus	17.61	17.15
Bra019297.1-P	Field mustard	nucleus	15.22	17.06
Bra013708.1-P	Field mustard	nucleus	14.63	16.55
Bra020814.1-P	Field mustard	nucleus	14.93	16.23
Bra005388.1-P	Field mustard	nucleus	18.51	15.38
Bra041029.1-P	Field mustard	nucleus	17.91	14.74
Bra026228.1-P	Field mustard	nucleus	17.31	14.65
Bra021934.1-P	Field mustard	nucleus	16.72	14.14

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra018303	EnsemblPlants:Bra018303.1	EnsemblPlants:Bra018303.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	UniProt:M4DP63	PFAM:PF03106	PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282
PANTHER:PTHR31282:SF12	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002547AC7	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
InterPro:Zn-cluster-dom	SEG:seg	:	:	:	:

Description

AT3G04670 (E=4e-059) WRKY39, ATWRKY39 | WRKY39; calmodulin binding / transcription factor

Coordinates

chrA05:-:7312763..7313931

Molecular Weight (calculated)

37889.1 Da

IEP (calculated)

10.130

GRAVY (calculated)

-0.736

Length

335 amino acids

Sequence
(BLAST)

001: MEEIEGANRA AVESSHRVLN LLCTPHQQDQ EYNNVSLLSE TREAVFMFKR ASSLLSTTSV GHARFRRAKE PQTHLSQSIF LDPVHQRTEP PPSQKVLRSG
101: FHELSTDSLT LGTRSFSLNS DVKAKAPLLQ LNQSIHQNMF PEHQQLHERL EAHRHQMQQQ QQKRQGEIML RKCNGGISLS FDNSSCTQTM SSTRSFVSSL
201: SIDGSVANVE GNNSFHLVGV QSSQHSKRKC LIKCGSSSRC HCSKKRKHRV RRSIRVPAIS NKVADIPPDD YSWRKYGQKP IKGSPYPRGY YKCSSMRGCP
301: ARKHVERCLE DPAMLIVTYE AEHSHPKLPS QAMTT

Best Arabidopsis Sequence Match ( AT2G30590.1 )
(BLAST)

001: MEEIEGTNRA AVESCHRVLN LLHRSQQQDH VGFEKNLVSE TREAVIRFKR VGSLLSSSVG HARFRRAKKL QSHVSQSLLL DPCQQRTTEV PSSSSQKTPV
101: LRSGFQELSL RQPSDSLTLG TRSFSLNSNA KAPLLQLNQQ TMPPSNYPTL FPVQQQQQQQ QQQQQQEQQQ QQQQQQQQFH ERLQAHHLHQ QQQLQKHQAE
201: LMLRKCNGGI SLSFDNSSCT PTMSSTRSFV SSLSIDGSVA NIEGKNSFHF GVPSSTDQNS LHSKRKCPLK GDEHGSLKCG SSSRCHCAKK RKHRVRRSIR
301: VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS MRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQAITT

Arabidopsis Description

WRKY21Probable WRKY transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:O04336]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.