Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra003251.1-P | |
| Bra007269.1-P | |
| Bra014671.1-P | |
| Bra036126.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24240.1 | Bra003251.1-P | AT3G56800.1 | 15733871 |
| AT4G24240.1 | Bra007269.1-P | AT3G56800.1 | 15733871 |
| AT4G24240.1 | Bra014671.1-P | AT3G56800.1 | 15733871 |
| AT4G24240.1 | Bra036126.1-P | AT5G28900.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10996 | Canola | nucleus | 98.85 | 99.14 |
| CDX92626 | Canola | nucleus | 96.26 | 96.26 |
| Bra013779.1-P | Field mustard | nucleus | 33.33 | 81.12 |
| AT4G24240.1 | Thale cress | nucleus | 77.59 | 76.49 |
| VIT_18s0001g10030.t01 | Wine grape | nucleus | 49.71 | 54.23 |
| Solyc04g078550.2.1 | Tomato | nucleus | 50.57 | 50.14 |
| PGSC0003DMT400020517 | Potato | nucleus | 50.0 | 49.15 |
| Bra032174.1-P | Field mustard | nucleus | 37.64 | 41.07 |
| Bra011282.1-P | Field mustard | nucleus | 36.49 | 39.44 |
| Bra032084.1-P | Field mustard | nucleus | 36.21 | 38.77 |
| Bra023998.1-P | Field mustard | nucleus | 36.21 | 38.41 |
| Bra010231.1-P | Field mustard | nucleus | 35.92 | 37.65 |
| Bra040396.1-P | Field mustard | nucleus | 29.31 | 33.66 |
| Bra001117.1-P | Field mustard | nucleus | 30.46 | 33.23 |
| Bra022808.1-P | Field mustard | nucleus | 31.9 | 32.84 |
| Bra021652.1-P | Field mustard | nucleus | 29.89 | 32.4 |
| Bra018303.1-P | Field mustard | nucleus | 31.03 | 32.24 |
| Bra010005.1-P | Field mustard | nucleus | 29.31 | 29.91 |
| Bra020617.1-P | Field mustard | nucleus | 28.45 | 29.38 |
| Bra010839.1-P | Field mustard | nucleus | 16.09 | 21.46 |
| Bra032300.1-P | Field mustard | nucleus | 15.8 | 20.99 |
| Bra007413.1-P | Field mustard | nucleus | 16.09 | 20.74 |
| Bra014556.1-P | Field mustard | nucleus | 15.8 | 19.78 |
| Bra037368.1-P | Field mustard | nucleus | 16.67 | 19.46 |
| Bra020814.1-P | Field mustard | nucleus | 16.09 | 18.18 |
| Bra019297.1-P | Field mustard | nucleus | 15.52 | 18.06 |
| Bra013708.1-P | Field mustard | nucleus | 14.37 | 16.89 |
| Bra026228.1-P | Field mustard | nucleus | 18.1 | 15.91 |
| Bra022612.1-P | Field mustard | nucleus | 15.52 | 15.7 |
| Bra005388.1-P | Field mustard | nucleus | 18.1 | 15.63 |
| Bra041029.1-P | Field mustard | nucleus | 18.1 | 15.48 |
| Bra021934.1-P | Field mustard | nucleus | 16.67 | 14.65 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | EnsemblPlantsGene:Bra019239 | EnsemblPlants:Bra019239.1 | EnsemblPlants:Bra019239.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 |
| UniProt:M4DRU6 | PFAM:PF03106 | PFAM:PF10533 | PFscan:PS50811 | PANTHER:PTHR31282 | PANTHER:PTHR31282:SF27 |
| SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0002540FC6 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | InterPro:Zn-cluster-dom |
| SEG:seg | : | : | : | : | : |
Description
AT4G24240 (E=2e-125) WRKY7, ATWRKY7 | WRKY7; calmodulin binding / transcription factor
Coordinates
chrA03:+:25525876..25527773
Molecular Weight (calculated)
38022.2 Da
IEP (calculated)
10.423
GRAVY (calculated)
-0.743
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVELIMSSS SSYGGGKVKR EEDGGFPAEK GDTALKEAAS AGIHGVQEFL KLIGQSQPTE EKQTEITAVT DVAVNSFKKV ISLLGRSRTG HARFRRGPVT
101: TTKPEEVVVK TEEKPGTKTT TTVVLNREKT EKHGGSAFRV YCPTPIHRRP PLSHAHHTQT KYGSSSSAPL LPNGKPHQEP PSSTIHFAPS PPVSAANSFM
201: SSHRCETESN QMSSGFEFTN PSSQFSGSRG KPPLSSASLK RKCSSTPSGR CHCTKKRKSK VKRVIRVPAV SSKMADIPSD EFSWRKYGQK PIKGSPHPRG
301: YYKCSSMRGC PARKHVERAP DDAMMLIVTY EGDHNHAMVL QTPHEKTL
101: TTKPEEVVVK TEEKPGTKTT TTVVLNREKT EKHGGSAFRV YCPTPIHRRP PLSHAHHTQT KYGSSSSAPL LPNGKPHQEP PSSTIHFAPS PPVSAANSFM
201: SSHRCETESN QMSSGFEFTN PSSQFSGSRG KPPLSSASLK RKCSSTPSGR CHCTKKRKSK VKRVIRVPAV SSKMADIPSD EFSWRKYGQK PIKGSPHPRG
301: YYKCSSMRGC PARKHVERAP DDAMMLIVTY EGDHNHAMVL QTPHEKTL
001: MTVELMMSSY SGGGGGGDGF PAIAAAAKME DTALREAASA GIHGVEEFLK LIGQSQQPTE KSQTEITAVT DVAVNSFKKV ISLLGRSRTG HARFRRAPAS
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDAMMLIV TYEGDHNHAL VLETTTMNHD KTL
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDAMMLIV TYEGDHNHAL VLETTTMNHD KTL
Arabidopsis Description
WRKY7Probable WRKY transcription factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STX0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.