Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24240.1 | CDY57144 | AT3G56800.1 | 15733871 |
| AT4G24240.1 | CDY65072 | AT3G56800.1 | 15733871 |
| AT4G24240.1 | CDY00020 | AT5G28900.1 | 21798944 |
| AT4G24240.1 | CDY57012 | AT5G28900.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10996 | Canola | nucleus | 96.55 | 96.83 |
| Bra019239.1-P | Field mustard | nucleus | 96.26 | 96.26 |
| CDY03470 | Canola | nucleus | 77.87 | 80.18 |
| AT4G24240.1 | Thale cress | nucleus | 77.3 | 76.2 |
| CDY34269 | Canola | nucleus | 77.3 | 67.08 |
| VIT_18s0001g10030.t01 | Wine grape | nucleus | 50.29 | 54.86 |
| Solyc04g078550.2.1 | Tomato | nucleus | 50.57 | 50.14 |
| PGSC0003DMT400020517 | Potato | nucleus | 50.0 | 49.15 |
| CDY20325 | Canola | nucleus | 35.63 | 43.82 |
| CDY38936 | Canola | nucleus | 37.93 | 43.42 |
| CDX89558 | Canola | nucleus | 36.49 | 42.62 |
| CDY60852 | Canola | nucleus | 36.49 | 42.62 |
| CDX72310 | Canola | nucleus | 34.48 | 42.25 |
| CDX68763 | Canola | nucleus | 35.34 | 41.28 |
| CDY36432 | Canola | nucleus | 33.33 | 41.13 |
| CDY13441 | Canola | nucleus | 34.48 | 40.96 |
| CDY23304 | Canola | nucleus | 35.63 | 40.52 |
| CDY45583 | Canola | nucleus | 37.07 | 39.69 |
| CDY40667 | Canola | nucleus | 30.46 | 33.33 |
| CDX74175 | Canola | nucleus | 30.46 | 33.02 |
| CDY50747 | Canola | nucleus | 28.74 | 33.0 |
| CDY47130 | Canola | nucleus | 32.18 | 32.65 |
| CDY41890 | Canola | nucleus | 29.31 | 32.59 |
| CDX84824 | Canola | nucleus | 31.61 | 32.54 |
| CDY10749 | Canola | nucleus | 31.03 | 32.34 |
| CDY29658 | Canola | nucleus | 29.6 | 31.99 |
| CDY23988 | Canola | nucleus | 31.03 | 31.76 |
| CDX97806 | Canola | nucleus | 29.89 | 31.52 |
| CDY48658 | Canola | nucleus | 29.89 | 30.86 |
| CDX86205 | Canola | nucleus | 29.31 | 29.91 |
| CDY05601 | Canola | nucleus | 28.45 | 29.38 |
| CDY33884 | Canola | nucleus | 28.45 | 29.38 |
| CDX71933 | Canola | nucleus | 16.09 | 28.14 |
| CDX90180 | Canola | nucleus | 16.09 | 21.46 |
| CDX99806 | Canola | nucleus | 15.8 | 21.07 |
| CDY49246 | Canola | nucleus | 16.09 | 20.66 |
| CDY01962 | Canola | nucleus | 17.24 | 20.62 |
| CDY50779 | Canola | nucleus | 15.52 | 20.61 |
| CDY69417 | Canola | nucleus | 13.22 | 19.91 |
| CDY07185 | Canola | nucleus | 16.67 | 19.86 |
| CDY00583 | Canola | nucleus | 15.8 | 19.71 |
| CDX89000 | Canola | nucleus | 15.8 | 19.71 |
| CDY48511 | Canola | nucleus | 16.67 | 19.46 |
| CDX76334 | Canola | nucleus | 16.38 | 18.51 |
| CDY41375 | Canola | nucleus | 16.38 | 18.51 |
| CDY10943 | Canola | nucleus | 15.8 | 18.39 |
| CDX94201 | Canola | nucleus | 15.8 | 18.39 |
| CDY44115 | Canola | nucleus | 14.37 | 16.89 |
| CDY59336 | Canola | nucleus | 14.37 | 16.89 |
| CDX77581 | Canola | nucleus | 17.82 | 16.4 |
| CDX98217 | Canola | nucleus | 17.82 | 16.1 |
| CDX96157 | Canola | nucleus | 15.8 | 15.8 |
| CDY27045 | Canola | nucleus | 15.52 | 15.7 |
| CDY52525 | Canola | nucleus | 18.39 | 15.35 |
| CDY09551 | Canola | nucleus | 17.82 | 15.01 |
| CDY43651 | Canola | nucleus | 16.67 | 13.94 |
| CDY72268 | Canola | cytosol, plastid | 0.86 | 2.91 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078DTN3 | EnsemblPlants:CDX92626 | ProteinID:CDX92626 | ProteinID:CDX92626.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00154427001 |
| InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFAM:PF10533 | PFscan:PS50811 | PANTHER:PTHR31282 |
| PANTHER:PTHR31282:SF27 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EEA68E | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| InterPro:Zn-cluster-dom | SEG:seg | : | : | : | : |
Description
BnaC07g38840D
Coordinates
chrLK031873:+:44370..46606
Molecular Weight (calculated)
38209.5 Da
IEP (calculated)
10.475
GRAVY (calculated)
-0.759
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVELMMSSS SYGGGKVKRE EDGGFPAEKG DTALKEAASA GIHGVEEFLK LIGQRQPTEE KQTEITAVTD VAVNSFKKVI SLLGRSRTGH ARFRRGPVTT
101: TKPEEVVVKT EEKPRTTTTT TTTVVLNREK TEKHGGSAFR VYCPTPIHRR PPLSHAHAHT KNGSSSPAPL LPNGKPHQEP PPSTIHFAPS PPVSAANSFM
201: SSHRCETESN QMSSGFEFTN PSSQFSGWRG KPPLSSASLK RKCSSTPSGR CHCTKKRKSK VKRVIRVPAV SSKMADIPSD EFSWRKYGQK PIKGSPHPRG
301: YYKCSSMRGC PARKHVERAP DDAMMLIVTY EGDHNHAMVL QTPHEKTL
101: TKPEEVVVKT EEKPRTTTTT TTTVVLNREK TEKHGGSAFR VYCPTPIHRR PPLSHAHAHT KNGSSSPAPL LPNGKPHQEP PPSTIHFAPS PPVSAANSFM
201: SSHRCETESN QMSSGFEFTN PSSQFSGWRG KPPLSSASLK RKCSSTPSGR CHCTKKRKSK VKRVIRVPAV SSKMADIPSD EFSWRKYGQK PIKGSPHPRG
301: YYKCSSMRGC PARKHVERAP DDAMMLIVTY EGDHNHAMVL QTPHEKTL
001: MTVELMMSSY SGGGGGGDGF PAIAAAAKME DTALREAASA GIHGVEEFLK LIGQSQQPTE KSQTEITAVT DVAVNSFKKV ISLLGRSRTG HARFRRAPAS
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDAMMLIV TYEGDHNHAL VLETTTMNHD KTL
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDAMMLIV TYEGDHNHAL VLETTTMNHD KTL
Arabidopsis Description
WRKY7Probable WRKY transcription factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STX0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.