Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24240.1 | CDY57144 | AT3G56800.1 | 15733871 |
| AT4G24240.1 | CDY65072 | AT3G56800.1 | 15733871 |
| AT4G24240.1 | CDY00020 | AT5G28900.1 | 21798944 |
| AT4G24240.1 | CDY57012 | AT5G28900.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013779.1-P | Field mustard | nucleus | 35.66 | 100.0 |
| CDY03470 | Canola | nucleus | 75.06 | 89.05 |
| CDY10996 | Canola | nucleus | 67.08 | 77.52 |
| CDX92626 | Canola | nucleus | 67.08 | 77.3 |
| AT4G24240.1 | Thale cress | nucleus | 66.58 | 75.64 |
| VIT_18s0001g10030.t01 | Wine grape | nucleus | 43.39 | 54.55 |
| Solyc04g078550.2.1 | Tomato | nucleus | 44.14 | 50.43 |
| PGSC0003DMT400020517 | Potato | nucleus | 43.64 | 49.44 |
| CDY20325 | Canola | nucleus | 31.42 | 44.52 |
| CDY60852 | Canola | nucleus | 32.42 | 43.62 |
| CDY38936 | Canola | nucleus | 32.92 | 43.42 |
| CDX89558 | Canola | nucleus | 31.92 | 42.95 |
| CDX72310 | Canola | nucleus | 30.17 | 42.61 |
| CDX68763 | Canola | nucleus | 31.42 | 42.28 |
| CDY36432 | Canola | nucleus | 29.43 | 41.84 |
| CDY13441 | Canola | nucleus | 30.17 | 41.3 |
| CDY45583 | Canola | nucleus | 32.92 | 40.62 |
| CDY23304 | Canola | nucleus | 30.92 | 40.52 |
| CDY40667 | Canola | nucleus | 28.18 | 35.53 |
| CDX74175 | Canola | nucleus | 28.18 | 35.2 |
| CDY50747 | Canola | nucleus | 26.43 | 34.98 |
| CDY41890 | Canola | nucleus | 26.93 | 34.5 |
| CDX84824 | Canola | nucleus | 28.43 | 33.73 |
| CDY47130 | Canola | nucleus | 28.43 | 33.24 |
| CDY23988 | Canola | nucleus | 28.18 | 33.24 |
| CDY10749 | Canola | nucleus | 27.43 | 32.93 |
| CDY29658 | Canola | nucleus | 26.43 | 32.92 |
| CDX97806 | Canola | nucleus | 26.68 | 32.42 |
| CDY48658 | Canola | nucleus | 26.93 | 32.05 |
| CDX86205 | Canola | nucleus | 26.68 | 31.38 |
| CDY05601 | Canola | nucleus | 26.18 | 31.16 |
| CDY33884 | Canola | nucleus | 25.94 | 30.86 |
| CDX71933 | Canola | nucleus | 14.21 | 28.64 |
| CDX90180 | Canola | nucleus | 14.21 | 21.84 |
| CDX99806 | Canola | nucleus | 13.97 | 21.46 |
| CDY49246 | Canola | nucleus | 14.21 | 21.03 |
| CDY50779 | Canola | nucleus | 13.72 | 20.99 |
| CDY01962 | Canola | nucleus | 14.96 | 20.62 |
| CDY00583 | Canola | nucleus | 13.97 | 20.07 |
| CDX89000 | Canola | nucleus | 13.97 | 20.07 |
| CDY69417 | Canola | nucleus | 11.47 | 19.91 |
| CDY07185 | Canola | nucleus | 14.46 | 19.86 |
| CDY48511 | Canola | nucleus | 14.46 | 19.46 |
| CDY41375 | Canola | nucleus | 13.47 | 17.53 |
| CDX76334 | Canola | nucleus | 13.47 | 17.53 |
| CDX94201 | Canola | nucleus | 12.97 | 17.39 |
| CDY10943 | Canola | nucleus | 12.97 | 17.39 |
| CDY44115 | Canola | nucleus | 12.72 | 17.23 |
| CDX96157 | Canola | nucleus | 14.46 | 16.67 |
| CDX77581 | Canola | nucleus | 15.71 | 16.67 |
| CDY27045 | Canola | nucleus | 14.21 | 16.57 |
| CDY59336 | Canola | nucleus | 12.22 | 16.55 |
| CDX98217 | Canola | nucleus | 15.71 | 16.36 |
| CDY52525 | Canola | nucleus | 16.21 | 15.59 |
| CDY09551 | Canola | nucleus | 15.71 | 15.25 |
| CDY43651 | Canola | nucleus | 14.71 | 14.18 |
| CDY72268 | Canola | cytosol, plastid | 0.5 | 1.94 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078H9U6 | UniProt:A0A078H9U6 | EnsemblPlants:CDY34269 | ProteinID:CDY34269 |
| ProteinID:CDY34269.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00056298001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFAM:PF10533 | PFscan:PS50811 |
| PANTHER:PTHR31282 | PANTHER:PTHR31282:SF27 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EE3733 | InterPro:WRKY_dom |
| InterPro:WRKY_dom_sf | InterPro:Zn-cluster-dom | SEG:seg | : | : | : |
Description
BnaA01g13720DBnaA01g13720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9U6]
Coordinates
chrLK032332:+:60369..62391
Molecular Weight (calculated)
44190.7 Da
IEP (calculated)
10.190
GRAVY (calculated)
-0.467
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVELMRNSY GGVRVKGEDD GGFSANMEDT ALREAASAGI HGVKEFLKLI NQKSQPTEEI TAVTDVAVNS FKKVISLLGR SRTGHARFRR APVTTKTKEG
101: GDWKTEEKPA TSAVVLNRQK TEQNGGSAFR VYCPTPIHRR PPLSHNNSLI TKNGSSSSAN NGRPQEPSTI NFAPSPPVSG ANSFMSSHRC DTESNQMSSG
201: FEFTNPSSQI SGSIGKPPLS SVSLKRRCDS SPSSRCHCTK KRKSRVKRVI RVPAVSSKMA DIPSDEYSWR KYGQKPIKGS PHPRLVLISF ISENNATCVY
301: CQIFFSILVV PNVSSSSSGF RTLFDLFIYL QSFKIHETEL SQLVLLGYYK CSSVRGCPAR KHVERALDDA MMLIVTYEGD HNHALCQTDR HNPVMRALKL
401: A
101: GDWKTEEKPA TSAVVLNRQK TEQNGGSAFR VYCPTPIHRR PPLSHNNSLI TKNGSSSSAN NGRPQEPSTI NFAPSPPVSG ANSFMSSHRC DTESNQMSSG
201: FEFTNPSSQI SGSIGKPPLS SVSLKRRCDS SPSSRCHCTK KRKSRVKRVI RVPAVSSKMA DIPSDEYSWR KYGQKPIKGS PHPRLVLISF ISENNATCVY
301: CQIFFSILVV PNVSSSSSGF RTLFDLFIYL QSFKIHETEL SQLVLLGYYK CSSVRGCPAR KHVERALDDA MMLIVTYEGD HNHALCQTDR HNPVMRALKL
401: A
001: MTVELMMSSY SGGGGGGDGF PAIAAAAKME DTALREAASA GIHGVEEFLK LIGQSQQPTE KSQTEITAVT DVAVNSFKKV ISLLGRSRTG HARFRRAPAS
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: R
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: R
Arabidopsis Description
WRKY7Probable WRKY transcription factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STX0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.