Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04670.1 | CDY57144 | AT3G56800.1 | 15733871 |
| AT3G04670.1 | CDY65072 | AT3G56800.1 | 15733871 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001117.1-P | Field mustard | nucleus | 96.88 | 97.49 |
| CDY40667 | Canola | nucleus | 93.46 | 94.34 |
| CDY50747 | Canola | nucleus | 79.44 | 84.16 |
| CDY41890 | Canola | nucleus | 81.93 | 84.03 |
| AT3G04670.1 | Thale cress | nucleus | 84.11 | 81.82 |
| CDY48658 | Canola | nucleus | 74.77 | 71.22 |
| CDX86205 | Canola | nucleus | 75.08 | 70.67 |
| CDY33884 | Canola | nucleus | 73.52 | 70.03 |
| CDY05601 | Canola | nucleus | 72.59 | 69.14 |
| GSMUA_Achr10P... | Banana | nucleus | 48.91 | 51.99 |
| Solyc09g066010.2.1 | Tomato | nucleus | 53.27 | 51.66 |
| VIT_07s0141g00680.t01 | Wine grape | nucleus | 54.52 | 51.47 |
| PGSC0003DMT400038986 | Potato | nucleus | 53.58 | 49.71 |
| CDY29658 | Canola | nucleus | 49.22 | 49.07 |
| KRH71315 | Soybean | nucleus | 53.58 | 48.45 |
| KRH67313 | Soybean | nucleus | 51.09 | 48.09 |
| Solyc06g008610.2.1 | Tomato | nucleus | 52.02 | 47.99 |
| CDX97806 | Canola | nucleus | 49.22 | 47.88 |
| CDY10749 | Canola | nucleus | 49.22 | 47.31 |
| TraesCS4B01G069500.2 | Wheat | nucleus | 49.84 | 47.06 |
| TraesCS4D01G068200.1 | Wheat | nucleus | 49.84 | 46.92 |
| PGSC0003DMT400013632 | Potato | nucleus | 51.71 | 46.76 |
| CDX84824 | Canola | nucleus | 49.22 | 46.75 |
| TraesCS4A01G246000.2 | Wheat | nucleus | 50.78 | 46.7 |
| EER91209 | Sorghum | nucleus | 51.09 | 46.59 |
| TraesCS5A01G059100.1 | Wheat | nucleus | 51.4 | 46.48 |
| TraesCS5B01G066400.1 | Wheat | nucleus | 51.4 | 46.48 |
| TraesCS5D01G070700.1 | Wheat | nucleus | 51.4 | 46.35 |
| CDY23988 | Canola | nucleus | 48.29 | 45.59 |
| CDY47130 | Canola | nucleus | 48.6 | 45.48 |
| Zm00001d033291_P007 | Maize | nucleus | 49.84 | 45.2 |
| Os12t0597700-01 | Rice | nucleus | 49.53 | 43.8 |
| EES17321 | Sorghum | nucleus | 49.84 | 43.13 |
| Zm00001d041397_P001 | Maize | nucleus | 48.91 | 42.78 |
| KRH32116 | Soybean | extracellular | 51.71 | 42.35 |
| Zm00001d013709_P003 | Maize | nucleus | 48.6 | 42.28 |
| Zm00001d030969_P001 | Maize | nucleus | 48.29 | 41.44 |
| Os03t0741400-01 | Rice | nucleus | 48.91 | 40.57 |
| CDY20325 | Canola | nucleus | 35.51 | 40.28 |
| HORVU4Hr1G011590.2 | Barley | nucleus, plastid | 50.78 | 39.56 |
| Zm00001d013307_P003 | Maize | nucleus | 47.98 | 38.99 |
| CDX89558 | Canola | nucleus | 36.14 | 38.93 |
| Zm00001d033965_P001 | Maize | nucleus | 47.98 | 38.79 |
| HORVU5Hr1G094050.1 | Barley | nucleus | 47.35 | 38.48 |
| CDY36432 | Canola | nucleus | 33.64 | 38.3 |
| CDX68763 | Canola | nucleus | 35.51 | 38.26 |
| CDY60852 | Canola | nucleus | 35.51 | 38.26 |
| EER93478 | Sorghum | nucleus | 48.29 | 38.18 |
| CDY38936 | Canola | nucleus | 36.14 | 38.16 |
| TraesCS5D01G390800.1 | Wheat | nucleus | 46.73 | 38.07 |
| TraesCS5A01G381000.1 | Wheat | nucleus | 46.73 | 37.78 |
| TraesCS5B01G384600.1 | Wheat | nucleus | 47.04 | 37.75 |
| CDX72310 | Canola | nucleus | 33.33 | 37.68 |
| CDY13441 | Canola | nucleus | 33.96 | 37.2 |
| CDY45583 | Canola | nucleus | 37.07 | 36.62 |
| CDY23304 | Canola | nucleus | 34.27 | 35.95 |
| CDY03470 | Canola | nucleus | 35.83 | 34.02 |
| CDY10996 | Canola | nucleus | 33.02 | 30.55 |
| CDX92626 | Canola | nucleus | 33.02 | 30.46 |
| CDY34269 | Canola | nucleus | 35.2 | 28.18 |
| CDX71933 | Canola | nucleus | 15.58 | 25.13 |
| CDX90180 | Canola | nucleus | 16.51 | 20.31 |
| CDX99806 | Canola | nucleus | 16.2 | 19.92 |
| CDY07185 | Canola | nucleus | 18.07 | 19.86 |
| CDY01962 | Canola | nucleus | 17.76 | 19.59 |
| CDY69417 | Canola | nucleus | 14.02 | 19.48 |
| CDY50779 | Canola | nucleus | 15.89 | 19.47 |
| CDY48511 | Canola | nucleus | 18.07 | 19.46 |
| CDY59336 | Canola | nucleus | 17.13 | 18.58 |
| CDY49246 | Canola | nucleus | 15.58 | 18.45 |
| CDY10943 | Canola | nucleus | 17.13 | 18.39 |
| CDY00583 | Canola | nucleus | 15.89 | 18.28 |
| CDX89000 | Canola | nucleus | 15.89 | 18.28 |
| CDX94201 | Canola | nucleus | 16.82 | 18.06 |
| CDY44115 | Canola | nucleus | 16.51 | 17.91 |
| CDX76334 | Canola | nucleus | 17.13 | 17.86 |
| CDY41375 | Canola | nucleus | 17.13 | 17.86 |
| CDY27045 | Canola | nucleus | 17.76 | 16.57 |
| CDX77581 | Canola | nucleus | 19.31 | 16.4 |
| CDX96157 | Canola | nucleus | 17.76 | 16.38 |
| CDX98217 | Canola | nucleus | 19.31 | 16.1 |
| CDY52525 | Canola | nucleus | 19.31 | 14.87 |
| CDY09551 | Canola | nucleus | 19.0 | 14.77 |
| CDY43651 | Canola | nucleus | 17.76 | 13.7 |
| CDY72268 | Canola | cytosol, plastid | 0.93 | 2.91 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078CBK7 | EnsemblPlants:CDX74175 | ProteinID:CDX74175 | ProteinID:CDX74175.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00111937001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFAM:PF10533 | PFscan:PS50811 |
| PANTHER:PTHR31282 | PANTHER:PTHR31282:SF12 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EDFB7A | InterPro:WRKY_dom |
| InterPro:WRKY_dom_sf | InterPro:Zn-cluster-dom | SEG:seg | : | : | : |
Description
BnaA03g28720D
Coordinates
chrLK031800:+:1657187..1658441
Molecular Weight (calculated)
35575.4 Da
IEP (calculated)
9.807
GRAVY (calculated)
-0.566
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVEVASKL AIESCHGVLN LLSQQQTSCD SNSLMVKTSE AVSKFKRVSS LFTRGSPGHA KFRRVNNKLS PFFPQHIFLE SPISCGNDVT SDYTQVLAPE
101: PLQMVPAPSM LSHRMCAEKS FLELKPPPPF RGPYQLIHNH HQQQIAYSRS SSGVNLKFDG AGSSSCYTPS VSNGSRSFVS SLSMDTSVTD YDRNSFHLSG
201: LSHGSDQMSK KMCSGGLKCG SRSKCHCSKK RKLRVKRSIK VPAISNKIAD IPPDEYSWRK YGQKPIKGSP HPRGYYKCSS VRGCPARKHV ERCVDETSML
301: IVTYEGEHNH SRLLSSQSAH T
101: PLQMVPAPSM LSHRMCAEKS FLELKPPPPF RGPYQLIHNH HQQQIAYSRS SSGVNLKFDG AGSSSCYTPS VSNGSRSFVS SLSMDTSVTD YDRNSFHLSG
201: LSHGSDQMSK KMCSGGLKCG SRSKCHCSKK RKLRVKRSIK VPAISNKIAD IPPDEYSWRK YGQKPIKGSP HPRGYYKCSS VRGCPARKHV ERCVDETSML
301: IVTYEGEHNH SRLLSSQSAH T
001: MEEVEAANRS AIESCHGVLN LLSQRTSDPK SLTVETGEVV SKFKRVASLL TRGLGHGKFR STNKFRSSFP QHIFLESPIC CGNDLSGDYT QVLAPEPLQM
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT
Arabidopsis Description
WRKY39Probable WRKY transcription factor 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.