Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04670.1 | CDY57144 | AT3G56800.1 | 15733871 |
| AT3G04670.1 | CDY65072 | AT3G56800.1 | 15733871 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040396.1-P | Field mustard | nucleus | 96.37 | 96.37 |
| CDY41890 | Canola | nucleus | 91.09 | 88.18 |
| CDY40667 | Canola | nucleus | 84.49 | 80.5 |
| AT3G04670.1 | Thale cress | nucleus | 86.8 | 79.7 |
| CDX74175 | Canola | nucleus | 84.16 | 79.44 |
| CDX86205 | Canola | nucleus | 73.6 | 65.4 |
| CDY48658 | Canola | nucleus | 72.28 | 64.99 |
| CDY33884 | Canola | nucleus | 70.96 | 63.8 |
| CDY05601 | Canola | nucleus | 69.97 | 62.91 |
| GSMUA_Achr10P... | Banana | nucleus | 50.16 | 50.33 |
| Solyc09g066010.2.1 | Tomato | nucleus | 54.46 | 49.85 |
| VIT_07s0141g00680.t01 | Wine grape | nucleus | 54.79 | 48.82 |
| PGSC0003DMT400038986 | Potato | nucleus | 54.46 | 47.69 |
| Solyc06g008610.2.1 | Tomato | nucleus | 52.81 | 45.98 |
| CDY29658 | Canola | nucleus | 48.51 | 45.65 |
| KRH71315 | Soybean | nucleus | 53.47 | 45.63 |
| TraesCS4B01G069500.2 | Wheat | nucleus | 51.16 | 45.59 |
| CDX97806 | Canola | nucleus | 49.51 | 45.45 |
| TraesCS4D01G068200.1 | Wheat | nucleus | 51.16 | 45.45 |
| TraesCS4A01G246000.2 | Wheat | nucleus | 52.15 | 45.27 |
| EER91209 | Sorghum | nucleus | 52.48 | 45.17 |
| KRH67313 | Soybean | nucleus | 50.83 | 45.16 |
| PGSC0003DMT400013632 | Potato | nucleus | 52.81 | 45.07 |
| TraesCS5D01G070700.1 | Wheat | nucleus | 52.15 | 44.38 |
| TraesCS5B01G066400.1 | Wheat | nucleus | 51.82 | 44.23 |
| CDX84824 | Canola | nucleus | 49.17 | 44.08 |
| Zm00001d033291_P007 | Maize | nucleus | 51.16 | 43.79 |
| CDY10749 | Canola | nucleus | 47.85 | 43.41 |
| TraesCS5A01G059100.1 | Wheat | nucleus | 50.83 | 43.38 |
| CDY23988 | Canola | nucleus | 47.85 | 42.65 |
| CDY47130 | Canola | nucleus | 48.18 | 42.57 |
| Os12t0597700-01 | Rice | nucleus | 50.16 | 41.87 |
| EES17321 | Sorghum | nucleus | 50.49 | 41.24 |
| Zm00001d041397_P001 | Maize | nucleus | 49.84 | 41.14 |
| Zm00001d013709_P003 | Maize | nucleus | 49.84 | 40.92 |
| Os03t0741400-01 | Rice | nucleus | 51.82 | 40.57 |
| KRH32116 | Soybean | extracellular | 52.15 | 40.31 |
| Zm00001d013307_P003 | Maize | nucleus | 51.82 | 39.75 |
| Zm00001d033965_P001 | Maize | nucleus | 51.49 | 39.29 |
| CDY20325 | Canola | nucleus | 36.63 | 39.22 |
| Zm00001d030969_P001 | Maize | nucleus | 47.85 | 38.77 |
| EER93478 | Sorghum | nucleus | 51.82 | 38.67 |
| HORVU4Hr1G011590.2 | Barley | nucleus, plastid | 51.82 | 38.11 |
| CDY36432 | Canola | nucleus | 34.98 | 37.59 |
| CDX72310 | Canola | nucleus | 34.98 | 37.32 |
| CDY60852 | Canola | nucleus | 36.63 | 37.25 |
| HORVU5Hr1G094050.1 | Barley | nucleus | 48.51 | 37.22 |
| TraesCS5D01G390800.1 | Wheat | nucleus | 48.18 | 37.06 |
| CDX68763 | Canola | nucleus | 36.3 | 36.91 |
| CDY13441 | Canola | nucleus | 35.64 | 36.86 |
| TraesCS5A01G381000.1 | Wheat | nucleus | 47.85 | 36.52 |
| TraesCS5B01G384600.1 | Wheat | nucleus | 48.18 | 36.5 |
| CDX89558 | Canola | nucleus | 35.64 | 36.24 |
| CDY45583 | Canola | nucleus | 38.28 | 35.69 |
| CDY23304 | Canola | nucleus | 35.64 | 35.29 |
| CDY38936 | Canola | nucleus | 35.31 | 35.2 |
| CDY03470 | Canola | nucleus | 35.64 | 31.95 |
| CDY10996 | Canola | nucleus | 33.0 | 28.82 |
| CDX92626 | Canola | nucleus | 33.0 | 28.74 |
| CDY34269 | Canola | nucleus | 34.98 | 26.43 |
| CDX71933 | Canola | nucleus | 15.84 | 24.12 |
| CDY07185 | Canola | nucleus | 19.14 | 19.86 |
| CDY01962 | Canola | nucleus | 18.81 | 19.59 |
| CDX90180 | Canola | nucleus | 16.83 | 19.54 |
| CDY69417 | Canola | nucleus | 14.85 | 19.48 |
| CDY48511 | Canola | nucleus | 19.14 | 19.46 |
| CDX99806 | Canola | nucleus | 16.5 | 19.16 |
| CDY50779 | Canola | nucleus | 16.17 | 18.7 |
| CDY59336 | Canola | nucleus | 17.49 | 17.91 |
| CDY49246 | Canola | nucleus | 15.84 | 17.71 |
| CDY44115 | Canola | nucleus | 17.16 | 17.57 |
| CDY00583 | Canola | nucleus | 16.17 | 17.56 |
| CDX89000 | Canola | nucleus | 16.17 | 17.56 |
| CDY10943 | Canola | nucleus | 17.16 | 17.39 |
| CDX94201 | Canola | nucleus | 16.83 | 17.06 |
| CDY41375 | Canola | nucleus | 17.16 | 16.88 |
| CDX76334 | Canola | nucleus | 17.16 | 16.88 |
| CDY27045 | Canola | nucleus | 18.81 | 16.57 |
| CDX96157 | Canola | nucleus | 18.81 | 16.38 |
| CDX77581 | Canola | nucleus | 19.47 | 15.61 |
| CDX98217 | Canola | nucleus | 19.47 | 15.32 |
| CDY52525 | Canola | nucleus | 20.46 | 14.87 |
| CDY09551 | Canola | nucleus | 19.14 | 14.04 |
| CDY43651 | Canola | nucleus | 18.48 | 13.46 |
| CDY72268 | Canola | cytosol, plastid | 0.99 | 2.91 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078ILD4 | UniProt:A0A078ILD4 | EnsemblPlants:CDY50747 | ProteinID:CDY50747 |
| ProteinID:CDY50747.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00097431001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 |
| PFAM:PF10533 | PFscan:PS50811 | PANTHER:PTHR31282 | PANTHER:PTHR31282:SF12 | SMART:SM00774 | SUPFAM:SSF118290 |
| UniParc:UPI0004EEE2E6 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | InterPro:Zn-cluster-dom | SEG:seg | : |
Description
BnaAnng10540DBnaAnng10540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILD4]
Coordinates
chrLK032937:-:14278..15974
Molecular Weight (calculated)
33443.7 Da
IEP (calculated)
9.908
GRAVY (calculated)
-0.584
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVEAASKL AIESCHGVLN LLSQHQTSSG SKSLMVETRE TVSKLKRVAS LLTKGSGHGK FKRTNNNKFS PSFPQHIFLE SPICCGNDVS SDYTQVLAPE
101: PLQMVPASDE IDPRYQLGHP LSHRWPPPFR APYKQIAYSR SNSGGVNLTF DGSASSCYTP SVSNGSRSFV SSLSMDTSVD RSSFQLTGLS RVKMCSGSLK
201: CGSRSKCHCS NKRKLRVKRS IKVPAISNKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERCVDETS MLIVTYEGEH NHSRILSSQS
301: AHT
101: PLQMVPASDE IDPRYQLGHP LSHRWPPPFR APYKQIAYSR SNSGGVNLTF DGSASSCYTP SVSNGSRSFV SSLSMDTSVD RSSFQLTGLS RVKMCSGSLK
201: CGSRSKCHCS NKRKLRVKRS IKVPAISNKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERCVDETS MLIVTYEGEH NHSRILSSQS
301: AHT
001: MEEVEAANRS AIESCHGVLN LLSQRTSDPK SLTVETGEVV SKFKRVASLL TRGLGHGKFR STNKFRSSFP QHIFLESPIC CGNDLSGDYT QVLAPEPLQM
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT
Arabidopsis Description
WRKY39Probable WRKY transcription factor 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.