Factsheet for Solyc06g008610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04670.1	Solyc01g008950.2.1	AT3G56800.1	15733871
AT3G04670.1	Solyc10g077010.1.1	AT3G56800.1	15733871
AT3G04670.1	Solyc10g081170.1.1	AT3G56800.1	15733871
AT3G04670.1	Solyc11g072240.1.1	AT3G56800.1	15733871
AT3G04670.1	Solyc12g099990.1.1	AT3G56800.1	15733871
AT5G28650.1	Solyc01g008950.2.1	AT3G56800.1	15733871
AT5G28650.1	Solyc10g077010.1.1	AT3G56800.1	15733871
AT5G28650.1	Solyc10g081170.1.1	AT3G56800.1	15733871
AT5G28650.1	Solyc11g072240.1.1	AT3G56800.1	15733871
AT5G28650.1	Solyc12g099990.1.1	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013632	Potato	nucleus	98.56	96.62
Solyc09g066010.2.1	Tomato	nucleus	75.29	79.15
VIT_07s0141g00680.t01	Wine grape	nucleus	68.68	70.29
GSMUA_Achr10P...	Banana	nucleus	49.43	56.95
Bra040396.1-P	Field mustard	nucleus	46.84	53.8
CDY50747	Canola	nucleus	45.98	52.81
Bra001117.1-P	Field mustard	nucleus	48.28	52.66
AT3G04670.1	Thale cress	nucleus	49.71	52.42
CDX74175	Canola	nucleus	47.99	52.02
CDY40667	Canola	nucleus	47.41	51.89
CDY41890	Canola	nucleus	46.26	51.44
AT5G28650.1	Thale cress	nucleus	48.28	50.91
CDY48658	Canola	nucleus	49.14	50.74
CDX86205	Canola	nucleus	48.85	49.85
Bra010005.1-P	Field mustard	nucleus	48.85	49.85
CDY05601	Canola	nucleus	47.99	49.55
TraesCS4D01G068200.1	Wheat	nucleus	48.28	49.27
TraesCS4B01G069500.2	Wheat	nucleus	47.99	49.12
CDY33884	Canola	nucleus	47.41	48.96
Bra020617.1-P	Field mustard	nucleus	47.41	48.96
TraesCS4A01G246000.2	Wheat	nucleus	48.56	48.42
Os12t0597700-01	Rice	nucleus	50.0	47.93
TraesCS5B01G066400.1	Wheat	nucleus	48.56	47.61
TraesCS5D01G070700.1	Wheat	nucleus	48.56	47.47
EER91209	Sorghum	nucleus	47.99	47.44
TraesCS5A01G059100.1	Wheat	nucleus	48.28	47.32
EES17321	Sorghum	nucleus	49.43	46.36
Zm00001d041397_P001	Maize	nucleus	48.85	46.32
Zm00001d033291_P007	Maize	nucleus	46.84	46.05
Zm00001d030969_P001	Maize	nucleus	47.99	44.65
Os03t0741400-01	Rice	nucleus	49.43	44.44
Zm00001d013709_P003	Maize	nucleus	46.84	44.17
Zm00001d013307_P003	Maize	nucleus	49.71	43.8
Zm00001d033965_P001	Maize	nucleus	49.71	43.58
EER93478	Sorghum	nucleus	47.99	41.13
HORVU4Hr1G011590.2	Barley	nucleus, plastid	47.99	40.53
TraesCS5D01G390800.1	Wheat	nucleus	45.69	40.36
HORVU5Hr1G094050.1	Barley	nucleus	45.69	40.25
TraesCS5A01G381000.1	Wheat	nucleus	45.11	39.55
TraesCS5B01G384600.1	Wheat	nucleus	45.11	39.25
Solyc02g093050.2.1	Tomato	nucleus	35.92	38.34
Solyc04g078550.2.1	Tomato	nucleus	36.21	35.9
Solyc08g006320.2.1	Tomato	nucleus	31.03	32.93
Solyc12g096350.1.1	Tomato	nucleus	30.46	31.36
Solyc10g011910.2.1	Tomato	nucleus	18.68	20.9
Solyc01g079360.2.1	Tomato	mitochondrion, nucleus	14.37	20.83
Solyc10g007970.1.1	Tomato	nucleus	14.94	20.39
Solyc07g055280.2.1	Tomato	nucleus	15.8	20.0
Solyc02g072190.2.1	Tomato	nucleus	16.95	19.16
Solyc01g095100.2.1	Tomato	nucleus	18.97	18.59
Solyc08g081610.2.1	Tomato	nucleus	14.66	16.83
Solyc02g021680.2.1	Tomato	nucleus	17.82	16.27

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4C3P1	PFAM:PF03106	PFAM:PF10533
PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF12	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc06g008610.2
EnsemblPlants:Solyc06g008610.2.1	UniParc:UPI000276690D	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	InterPro:Zn-cluster-dom	SEG:seg

Description

No Description!

Coordinates

chr6:+:2512503..2514892

Molecular Weight (calculated)

39054.3 Da

IEP (calculated)

10.079

GRAVY (calculated)

-0.784

Length

348 amino acids

Sequence
(BLAST)

001: MEEIEEVNKA AVENCHRVIS LLSSRTHDQN SYTNLVRETG EAVHKFKKVV TLLNSTLGHA RVRKSNKFMT PLPHNILVEN PNCKIDDQAK ALRLLPIDTP
101: ENRVLEMGAN VKCNLTLGSP SLELSSNSRN PLNFGQQTPF PSYNYLQQQQ QQQQQRRFLL QQQQQLKQPA EMMYRRSNSG VSLNFDSSTC TPTMSSTRSF
201: ISSLSVDGSV ANGNSFHLIG ASHSADQSSF QHKRKCSGRG DEGSGKCGSS GRCHCSKKRK HRVKRSIKIP AVSNKLADIP SDEYSWRKYG QKPIKGSPHP
301: RGYYKCSSMR GCPARKHVER CLEDASMLIV TYEGEHNHPR LPSQLANT

Best Arabidopsis Sequence Match ( AT2G30590.1 )
(BLAST)

001: MEEIEGTNRA AVESCHRVLN LLHRSQQQDH VGFEKNLVSE TREAVIRFKR VGSLLSSSVG HARFRRAKKL QSHVSQSLLL DPCQQRTTEV PSSSSQKTPV
101: LRSGFQELSL RQPSDSLTLG TRSFSLNSNA KAPLLQLNQQ TMPPSNYPTL FPVQQQQQQQ QQQQQQEQQQ QQQQQQQQFH ERLQAHHLHQ QQQLQKHQAE
201: LMLRKCNGGI SLSFDNSSCT PTMSSTRSFV SSLSIDGSVA NIEGKNSFHF GVPSSTDQNS LHSKRKCPLK GDEHGSLKCG SSSRCHCAKK RKHRVRRSIR
301: VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS MRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQAITT

Arabidopsis Description

WRKY21Probable WRKY transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:O04336]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.