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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, mitochondrion

Predictor Summary:
  • nucleus 5
  • plastid 1
  • mitochondrion 4
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400023272 Potato mitochondrion, nucleus 93.75 92.21
KRH68270 Soybean nucleus 42.08 39.92
KRG96534 Soybean nucleus 42.5 35.92
Solyc10g007970.1.1 Tomato nucleus 28.75 27.06
Solyc07g055280.2.1 Tomato nucleus 27.92 24.36
Solyc02g072190.2.1 Tomato nucleus 28.33 22.08
Solyc08g081610.2.1 Tomato nucleus 25.0 19.8
Solyc10g011910.2.1 Tomato nucleus 25.0 19.29
Solyc02g021680.2.1 Tomato nucleus 29.17 18.37
Solyc01g095100.2.1 Tomato nucleus 25.0 16.9
Solyc02g093050.2.1 Tomato nucleus 20.42 15.03
Solyc09g066010.2.1 Tomato nucleus 20.0 14.5
Solyc06g008610.2.1 Tomato nucleus 20.83 14.37
Solyc08g006320.2.1 Tomato nucleus 19.58 14.33
Solyc04g078550.2.1 Tomato nucleus 20.42 13.96
Solyc12g096350.1.1 Tomato nucleus 17.92 12.72
VIT_00s2547g00010.t01 Wine grape nucleus 11.25 11.74
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0043565InterPro:IPR003657InterPro:IPR036576UniProt:K4AXI1PFAM:PF03106PFscan:PS50811
PANTHER:PTHR31282PANTHER:PTHR31282:SF28SMART:SM00774SUPFAM:SSF118290EnsemblPlantsGene:Solyc01g079360.2EnsemblPlants:Solyc01g079360.2.1
UniParc:UPI0002761B48InterPro:WRKY_domInterPro:WRKY_dom_sfSEG:seg::
Description
No Description!
Coordinates
chr1:-:78449668..78451333
Molecular Weight (calculated)
26885.2 Da
IEP (calculated)
4.790
GRAVY (calculated)
-0.877
Length
240 amino acids
Sequence
(BLAST)
001: MGRSKPTKSQ SKTSRLLQPQ FLASKNRKMA QKVVMTVQME AKSLKQKNEG PPSDCWSWRK YGQKPIKGSP YPRGYYRCSS SKGCSAKKQV ERCSKDASLF
101: IITYTSSHNH PGPNLPKDSV KQEPVVDQHV SLEDNNDEDD DDDDDNDTQS CKTPLNSTTT STSIPQGILE ENLFTDNFLG TISYDDFLPL SYPQLMKFPK
201: SELSEENDFY DELGELELPP SSSTSFAGIF EEAILVDPSS
Best Arabidopsis Sequence Match ( AT1G29280.1 )
(BLAST)
001: MKRGLDMARS YNDHESSQET GPESPNSSTF NGMKALISSH SPKRSRRSVE KRVVNVPMKE MEGSRHKGDT TPPSDSWAWR KYGQKPIKGS PYPRGYYRCS
101: STKGCPARKQ VERSRDDPTM ILITYTSEHN HPWPLTSSTR NGPKPKPEPK PEPEPEVEPE AEEEDNKFMV LGRGIETTPS CVDEFAWFTE METTSSTILE
201: SPIFSSEKKT AVSGADDVAV FFPMGEEDES LFADLGELPE CSVVFRHRSS VVGSQVEIF
Arabidopsis Description
WRKY65WRKY65 [Source:UniProtKB/TrEMBL;Acc:A0A178W690]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.