Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G069500.2 | Wheat | nucleus | 98.83 | 99.12 |
| TraesCS4A01G246000.2 | Wheat | nucleus | 98.83 | 96.56 |
| EER91209 | Sorghum | nucleus | 85.63 | 82.95 |
| Zm00001d033291_P007 | Maize | nucleus | 84.16 | 81.07 |
| HORVU4Hr1G011590.2 | Barley | nucleus, plastid | 95.6 | 79.13 |
| Zm00001d013709_P003 | Maize | nucleus | 81.82 | 75.61 |
| TraesCS5D01G070700.1 | Wheat | nucleus | 66.57 | 63.76 |
| GSMUA_Achr10P... | Banana | nucleus | 51.03 | 57.62 |
| VIT_07s0141g00680.t01 | Wine grape | nucleus | 53.37 | 53.53 |
| KRH71315 | Soybean | nucleus | 54.84 | 52.68 |
| Solyc09g066010.2.1 | Tomato | nucleus | 50.73 | 52.27 |
| PGSC0003DMT400038986 | Potato | nucleus | 51.91 | 51.16 |
| CDY50747 | Canola | nucleus | 45.45 | 51.16 |
| Bra040396.1-P | Field mustard | nucleus | 45.45 | 51.16 |
| AT5G28650.1 | Thale cress | nucleus | 48.68 | 50.3 |
| CDX74175 | Canola | nucleus | 46.92 | 49.84 |
| Bra001117.1-P | Field mustard | nucleus | 46.63 | 49.84 |
| AT3G04670.1 | Thale cress | nucleus | 48.09 | 49.7 |
| Bra010005.1-P | Field mustard | nucleus | 49.56 | 49.56 |
| CDX86205 | Canola | nucleus | 49.56 | 49.56 |
| CDY48658 | Canola | nucleus | 48.97 | 49.55 |
| CDY33884 | Canola | nucleus | 48.68 | 49.26 |
| Bra020617.1-P | Field mustard | nucleus | 48.68 | 49.26 |
| CDY40667 | Canola | nucleus | 45.75 | 49.06 |
| CDY05601 | Canola | nucleus | 48.39 | 48.96 |
| CDY41890 | Canola | nucleus | 44.87 | 48.88 |
| Solyc06g008610.2.1 | Tomato | nucleus | 49.27 | 48.28 |
| PGSC0003DMT400013632 | Potato | nucleus | 49.27 | 47.32 |
| KRH67313 | Soybean | nucleus | 47.21 | 47.21 |
| KRH32116 | Soybean | extracellular | 53.67 | 46.68 |
| TraesCS5D01G390800.1 | Wheat | nucleus | 47.21 | 40.86 |
| TraesCS2D01G269200.1 | Wheat | nucleus | 32.84 | 35.78 |
| TraesCS2D01G431000.1 | Wheat | nucleus | 33.14 | 34.88 |
| TraesCS5D01G382600.1 | Wheat | nucleus | 29.62 | 33.67 |
| TraesCS5D01G071800.1 | Wheat | nucleus | 28.45 | 32.77 |
| TraesCS5D01G451000.1 | Wheat | nucleus | 36.36 | 25.78 |
| TraesCS3D01G289500.1 | Wheat | nucleus | 16.13 | 19.57 |
| TraesCS4D01G320200.1 | Wheat | nucleus | 15.54 | 18.93 |
| TraesCS1D01G431600.1 | Wheat | nucleus | 16.13 | 18.64 |
| TraesCS1D01G200900.1 | Wheat | nucleus | 17.89 | 17.94 |
| TraesCS3D01G227400.1 | Wheat | nucleus | 16.72 | 17.81 |
| TraesCS3D01G281900.1 | Wheat | nucleus, plastid | 14.96 | 17.11 |
| TraesCS5D01G564500.2 | Wheat | nucleus | 17.3 | 16.12 |
| TraesCS4D01G320000.1 | Wheat | nucleus | 14.08 | 16.11 |
| TraesCS7D01G336400.1 | Wheat | nucleus | 15.54 | 14.89 |
| TraesCS2D01G443000.1 | Wheat | nucleus | 20.53 | 13.75 |
| TraesCS6D01G247200.1 | Wheat | nucleus | 18.18 | 12.89 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFAM:PF10533 |
| PFscan:PS50811 | PANTHER:PTHR31282 | PANTHER:PTHR31282:SF23 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS4D01G068200 |
| EnsemblPlants:TraesCS4D01G068200.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | InterPro:Zn-cluster-dom | SEG:seg | : |
Description
No Description!
Coordinates
chr4D:+:43554146..43556024
Molecular Weight (calculated)
37240.2 Da
IEP (calculated)
10.440
GRAVY (calculated)
-0.685
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVEEANRM AVASCHRVLG LLAQTQDPAQ LRSIALGTDE ACAKFRKVVS LLGNGNEGGG THPRAKLVSR RQTPGFLSQK SFLDNNTPVV VLNSAHPSTS
101: SAQVYPRNSS ILDSQPAHPI GGPPKLVQPL SAHFQFGDSS RYNQFQQHQH QQQKMRAEMF KRSNSGINLK FDSPSGTGTM SSARSFMSSL SMDGSVASLD
201: AKSSSFHLIG GPAMSDPVNA QQAPRRRCSG RGEDGNGKCA ATGRCHCSKR SRKLRLKRTI KVPAISNKIA DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS
301: SVRGCPARKH VERCVDDPSM LIVTYEGEHN HTRMPTQSAQ A
101: SAQVYPRNSS ILDSQPAHPI GGPPKLVQPL SAHFQFGDSS RYNQFQQHQH QQQKMRAEMF KRSNSGINLK FDSPSGTGTM SSARSFMSSL SMDGSVASLD
201: AKSSSFHLIG GPAMSDPVNA QQAPRRRCSG RGEDGNGKCA ATGRCHCSKR SRKLRLKRTI KVPAISNKIA DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS
301: SVRGCPARKH VERCVDDPSM LIVTYEGEHN HTRMPTQSAQ A
001: MEEVEAANRS AIESCHGVLN LLSQRTSDPK SLTVETGEVV SKFKRVASLL TRGLGHGKFR STNKFRSSFP QHIFLESPIC CGNDLSGDYT QVLAPEPLQM
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT
Arabidopsis Description
WRKY39Probable WRKY transcription factor 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.