Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G068200.1 | Wheat | nucleus | 96.56 | 98.83 |
| TraesCS4B01G069500.2 | Wheat | nucleus | 96.28 | 98.82 |
| EER91209 | Sorghum | nucleus | 85.1 | 84.38 |
| Zm00001d033291_P007 | Maize | nucleus | 83.38 | 82.2 |
| HORVU4Hr1G011590.2 | Barley | nucleus, plastid | 93.98 | 79.61 |
| Zm00001d013709_P003 | Maize | nucleus | 80.8 | 76.42 |
| TraesCS5A01G059100.1 | Wheat | nucleus | 65.9 | 64.79 |
| GSMUA_Achr10P... | Banana | nucleus | 51.0 | 58.94 |
| VIT_07s0141g00680.t01 | Wine grape | nucleus | 53.01 | 54.41 |
| KRH71315 | Soybean | nucleus | 54.73 | 53.8 |
| Solyc09g066010.2.1 | Tomato | nucleus | 50.14 | 52.87 |
| Bra040396.1-P | Field mustard | nucleus | 45.27 | 52.15 |
| CDY50747 | Canola | nucleus | 45.27 | 52.15 |
| PGSC0003DMT400038986 | Potato | nucleus | 51.29 | 51.73 |
| AT5G28650.1 | Thale cress | nucleus | 48.42 | 51.21 |
| Bra001117.1-P | Field mustard | nucleus | 46.42 | 50.78 |
| CDX74175 | Canola | nucleus | 46.7 | 50.78 |
| AT3G04670.1 | Thale cress | nucleus | 47.85 | 50.61 |
| CDY48658 | Canola | nucleus | 48.71 | 50.45 |
| Bra010005.1-P | Field mustard | nucleus | 49.28 | 50.44 |
| CDX86205 | Canola | nucleus | 49.28 | 50.44 |
| CDY33884 | Canola | nucleus | 48.42 | 50.15 |
| Bra020617.1-P | Field mustard | nucleus | 48.42 | 50.15 |
| CDY40667 | Canola | nucleus | 45.56 | 50.0 |
| CDY05601 | Canola | nucleus | 48.14 | 49.85 |
| CDY41890 | Canola | nucleus | 44.7 | 49.84 |
| Solyc06g008610.2.1 | Tomato | nucleus | 48.42 | 48.56 |
| KRH67313 | Soybean | nucleus | 46.99 | 48.09 |
| KRH32116 | Soybean | extracellular | 53.87 | 47.96 |
| PGSC0003DMT400013632 | Potato | nucleus | 48.42 | 47.61 |
| TraesCS5A01G381000.1 | Wheat | nucleus | 46.13 | 40.55 |
| TraesCS2A01G270200.2 | Wheat | nucleus | 32.38 | 35.31 |
| TraesCS2A01G433000.1 | Wheat | nucleus | 32.66 | 34.76 |
| TraesCS5A01G060200.1 | Wheat | nucleus | 28.08 | 33.22 |
| TraesCS5A01G373100.1 | Wheat | nucleus | 28.08 | 32.89 |
| TraesCS5A01G443600.1 | Wheat | nucleus | 35.53 | 27.68 |
| TraesCS3A01G289700.2 | Wheat | nucleus | 15.76 | 19.16 |
| TraesCS5A01G495800.1 | Wheat | nucleus | 15.19 | 17.97 |
| TraesCS3A01G229300.1 | Wheat | nucleus | 16.05 | 17.72 |
| TraesCS1A01G197400.1 | Wheat | nucleus | 17.19 | 17.54 |
| TraesCS3A01G281900.1 | Wheat | nucleus | 14.61 | 17.11 |
| TraesCS4A01G320800.2 | Wheat | nucleus | 17.19 | 16.26 |
| TraesCS7A01G343000.2 | Wheat | nucleus | 15.47 | 15.17 |
| TraesCS2A01G443800.1 | Wheat | nucleus | 20.34 | 13.95 |
| TraesCS6A01G267500.1 | Wheat | nucleus | 18.05 | 13.1 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFAM:PF10533 |
| PFscan:PS50811 | PANTHER:PTHR31282 | PANTHER:PTHR31282:SF23 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS4A01G246000 |
| EnsemblPlants:TraesCS4A01G246000.2 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | InterPro:Zn-cluster-dom | SEG:seg | : |
Description
No Description!
Coordinates
chr4A:+:556537589..556539453
Molecular Weight (calculated)
38039.9 Da
IEP (calculated)
10.368
GRAVY (calculated)
-0.719
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVEEANRM AVESCHRVLG LLAQTQDPAQ LRSIALGTDE ACAKFRKVVS LLGNGNGNGN EGGGTHHPRA KLVSRRQTPG FLSQKSFLDN NTPVVVLNSA
101: HPSTSSAQVY PSSRNSILDS SQAAHPIGGP PKLVQPLSAH FQFGDSSRYN QFQQQHQHQQ QKMRAEMFKR SNSGINLKFD SPSGTGTMSS ARSFMSSLSM
201: DGSVASLDAK SSSFHLIGGP AMSDPVNAQQ APRRRCSGRG EDGNGKCAAT GRCHCSKRSR KLRVKRTIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH
301: PRGYYKCSSV RGCPARKHVE RCVDDPSMLI VTYEGEHNHT RMPTQSAQA
101: HPSTSSAQVY PSSRNSILDS SQAAHPIGGP PKLVQPLSAH FQFGDSSRYN QFQQQHQHQQ QKMRAEMFKR SNSGINLKFD SPSGTGTMSS ARSFMSSLSM
201: DGSVASLDAK SSSFHLIGGP AMSDPVNAQQ APRRRCSGRG EDGNGKCAAT GRCHCSKRSR KLRVKRTIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH
301: PRGYYKCSSV RGCPARKHVE RCVDDPSMLI VTYEGEHNHT RMPTQSAQA
001: MEEVEAANRS AIESCHGVLN LLSQRTSDPK SLTVETGEVV SKFKRVASLL TRGLGHGKFR STNKFRSSFP QHIFLESPIC CGNDLSGDYT QVLAPEPLQM
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT
Arabidopsis Description
WRKY39Probable WRKY transcription factor 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.