Factsheet for TraesCS2A01G401200.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G398600.1	Wheat	nucleus	91.5	93.37
TraesCS2B01G419200.1	Wheat	nucleus	91.38	93.12
HORVU2Hr1G095210.1	Barley	nucleus	83.5	85.64
Os04t0569100-01	Rice	nucleus	58.88	58.44
TraesCS6A01G255800.1	Wheat	nucleus	56.12	55.85
KXG26935	Sorghum	nucleus	54.12	53.99
GSMUA_Achr1P18760_001	Banana	nucleus	50.38	53.31
VIT_15s0048g02000.t01	Wine grape	nucleus	52.25	51.54
Zm00001d026088_P002	Maize	nucleus	53.25	51.08
CDY18903	Canola	nucleus	45.0	51.06
CDX74762	Canola	nucleus	44.75	50.56
KRH40539	Soybean	nucleus	51.25	50.0
KRH48236	Soybean	nucleus	51.62	49.82
KRH00641	Soybean	nucleus	50.88	49.51
PGSC0003DMT400071377	Potato	nucleus	50.5	49.21
KRH65144	Soybean	nucleus	51.38	49.16
CDX67855	Canola	nucleus	47.88	49.1
Solyc01g091630.2.1	Tomato	nucleus	50.38	49.09
GSMUA_Achr3P12410_001	Banana	nucleus	45.25	48.79
CDY45684	Canola	nucleus	47.75	48.72
Bra003439.1-P	Field mustard	nucleus	47.75	48.66
Bra037355.1-P	Field mustard	nucleus	47.88	48.48
Bra004934.1-P	Field mustard	nucleus	47.62	48.47
CDY51143	Canola	nucleus	47.75	48.35
CDY07201	Canola	nucleus	47.5	48.22
CDX74347	Canola	nucleus	47.5	47.92
CDX91894	Canola	nucleus	47.38	47.73
PGSC0003DMT400019986	Potato	nucleus	48.25	47.71
AT3G61150.1	Thale cress	nucleus	47.62	47.15
AT4G00730.1	Thale cress	nucleus	47.25	47.13
TraesCS5A01G314400.2	Wheat	nucleus	47.5	44.76
TraesCS6A01G324500.1	Wheat	nucleus	36.88	43.07
TraesCS7A01G308400.1	Wheat	nucleus	42.5	42.71
TraesCS2A01G474000.1	Wheat	nucleus	40.25	41.44
TraesCS7A01G167900.1	Wheat	nucleus	32.38	35.72
TraesCS7A01G168100.1	Wheat	nucleus	6.38	34.69
TraesCS3A01G305300.1	Wheat	nucleus	32.12	33.77
TraesCS7A01G168000.1	Wheat	nucleus	5.38	31.62
TraesCS1A01G193400.1	Wheat	nucleus, plastid	33.12	30.36
TraesCS4A01G231300.2	Wheat	nucleus	28.12	29.15
TraesCS3A01G325800.1	Wheat	nucleus	24.12	28.26
TraesCS7A01G215300.1	Wheat	nucleus	6.0	28.07
TraesCS5A01G330200.1	Wheat	nucleus	26.0	27.96
TraesCS4A01G072000.1	Wheat	nucleus	7.5	26.91
TraesCS7A01G215400.1	Wheat	nucleus	6.0	26.82
TraesCS3A01G119200.1	Wheat	nucleus	6.0	26.52

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
PFAM:PF00046	PFAM:PF01852	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF490
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS2A01G401200
EnsemblPlants:TraesCS2A01G401200.3	TIGR:cd00086	TIGR:cd08875	SEG:seg	:	:

Description

No Description!

Coordinates

chr2A:+:654907311..654912789

Molecular Weight (calculated)

85972.9 Da

IEP (calculated)

5.486

GRAVY (calculated)

-0.150

Length

800 amino acids

Sequence
(BLAST)

001: MPREKGMAFW GFFDGDGDDG GPAPGMNEFP YYAAAGPGAL ASSSLSPPSS LAPAGDGRGF VKVEDGSRSM TDHLHAVSGG DAGGGEDGEA APELDHRGKR
101: KRPANARHTP RQIHELQALF EQCPHPDEKQ RAALGKRVRL QPSQVKFWFQ NRRTQLKRES LLHENQQLMA ENGKLRAENL SLRVAMAHPV CGGCGGPVPA
201: MLDESPSLEE EDLRVQNATL KNELSRLCAL ASVFLGRSIS YVAAPPTPGS PAERIGSVPA TTVANSTVTE FTGSPSSQTA GMAITAMAKA GIDRSVFLEL
301: ATSAMDELVK MAQMDEPLWI PNVPLPGSLA KETLNHEVYL RTFSPAIGVK PPGFVSEASR ESGIVSSDGS VELVETLLDE RRWSRFFSCI IAESSTIEEI
401: STGAAGSRDG ALLLVSMQAK LQVLSPLVPI REVTFLRFCK KLGEGFWAVV DVSMDELVME QGLAVASTTA NMKCRRLPSG CVVQDTPNGF CKVTWVEHTV
501: YDESSVHQLY RPLLRSGLAL GAGRWLATLQ RQYDCLDVLM PKQDSSDAML EGSRSLLRLA ERMMDNFCAG VSASSAEWSK LEDVTGSIGE DVRIMACRSV
601: DEPGVPAGVV LCAATSVWML VTPKRLFNFL CNERTRAEWD ILSKGGPMQE VTKIYKGQQN GNAVSLLKAT APNTQQDSSI LILQETCTDA SSSMVVYTPV
701: DIPAMRRVMG GEGDPASIML LPSGFAILPG WPSISGDDGH KTCGSLLTVA FQILGNRQPT GKLTVESVQT VDSLISCTIN RIKTALRRLS ELGDGGTLLA

Best Arabidopsis Sequence Match ( AT1G05230.8 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.