CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026088_P002	Maize	nucleus	86.53	83.21
Os04t0569100-01	Rice	nucleus	66.71	66.38
EES02604	Sorghum	nucleus	65.96	64.91
GSMUA_Achr1P18760_001	Banana	nucleus	53.99	57.28
VIT_15s0048g02000.t01	Wine grape	nucleus	57.73	57.09
CDY18903	Canola	nucleus	49.5	56.31
KRH40539	Soybean	nucleus	57.36	56.1
CDX74762	Canola	nucleus	49.5	56.07
KRH00641	Soybean	nucleus	57.11	55.72
TraesCS2B01G419200.1	Wheat	nucleus	54.36	55.54
HORVU2Hr1G095210.1	Barley	nucleus	53.99	55.51
TraesCS2D01G398600.1	Wheat	nucleus	53.87	55.1
KRH48236	Soybean	nucleus	56.48	54.64
AT4G00730.1	Thale cress	nucleus	54.36	54.36
CDX74347	Canola	nucleus	53.74	54.35
Solyc01g091630.2.1	Tomato	nucleus	55.61	54.32
PGSC0003DMT400071377	Potato	nucleus	55.61	54.32
CDX91894	Canola	nucleus	53.74	54.28
KRH65144	Soybean	nucleus	56.48	54.19
Bra037355.1-P	Field mustard	nucleus	53.37	54.18
TraesCS2A01G401200.3	Wheat	nucleus	53.99	54.12
CDY51143	Canola	nucleus	53.24	54.05
CDY07201	Canola	nucleus	52.87	53.81
Bra004934.1-P	Field mustard	nucleus	52.49	53.56
CDX67855	Canola	nucleus	51.62	53.08
PGSC0003DMT400019986	Potato	nucleus	53.24	52.78
CDY45684	Canola	nucleus	51.5	52.68
Bra003439.1-P	Field mustard	nucleus	51.5	52.61
GSMUA_Achr3P12410_001	Banana	nucleus	48.38	52.29
AT3G61150.1	Thale cress	nucleus	51.87	51.49
EER99222	Sorghum	nucleus	53.24	48.97
EES05874	Sorghum	nucleus	41.27	46.82
EES11464	Sorghum	nucleus	45.89	46.64
EES13460	Sorghum	mitochondrion, nucleus	45.26	46.48
EES14500	Sorghum	nucleus	45.39	44.72
EER89393	Sorghum	nucleus	38.4	44.0
EER98409	Sorghum	nucleus	31.17	34.25
OQU87592	Sorghum	nucleus	29.68	33.47
KXG38837	Sorghum	nucleus	36.03	32.77
OQU81266	Sorghum	nucleus	30.55	31.86
OQU81174	Sorghum	nucleus	29.3	31.84
EES01587	Sorghum	nucleus	26.81	28.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	UniProt:A0A1B6PMQ5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	EnsemblPlants:KXG26935	ProteinID:KXG26935	ProteinID:KXG26935.1	PFAM:PF00046
PFAM:PF01852	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF490	SMART:SM00234	SMART:SM00389	EnsemblPlantsGene:SORBI_3006G183200	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START_lipid-bd_dom	UniParc:UPI00081AB971	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:53818220..53824454

Molecular Weight (calculated)

86145.3 Da

IEP (calculated)

5.684

GRAVY (calculated)

-0.115

Length

802 amino acids

Sequence
(BLAST)

001: MSFGDLLDGG GSAAGVQFPY GVFASSPALS LAVVDAGRRR DGGSAARAGS SARRGGGGNG KDASEAENEG QSMVSGHLDV VLSGGGDGED DEDGEDANPR
101: KRKRRYNRHT PHQIARLEAM FKEFPHPDEK QRAELSKQLG LEPRQVKFWF QNRRTNAKNQ MERQENARLK QENDKLRVEN LSIREAMRDL VCSGCGGPAV
201: LGDLSLEERH LRLENARLRD ELARVCTLTA KFIGKPMSHM ELLAVAEEPH PMPGSSLELA VAGGVGSGVP SSKMPVSTIS ELAGSTSSAM GTVITPMVTA
301: SLPMVSIDKS KFAQLAVSAM NELVKMAQTN EPLWIPSASS PGSPTMETLN FKEYLKAFTP CVGVKRNGFV SEASRESGIV TVDSSAALVE AFMDERRWSD
401: MFSCIVAKAA TIEEISPGVA GSRNGALLLM QAELQVLSPL VPIREVTFLR FCKQLAESAW AVVDVSIDGL QMDHCLATNT KCRRLPSGCV LQDTPNGCKV
501: TWVEHAEYPE ASVHQLYQPL LCSGLALGAG RWLATLQRQC ECLAILMSSL AVPEHDSEAV SLEGKRSLLK LARRMMENFC AGMSASSSCE WSILDGLTGS
601: MGKDVRVMVQ NSVDEPGVPP GVVLSVATAV WLPVTPERLF NFLRDEELRA EWDILSNGGP MQQMLRITKG QLDGNSVTLL RADHTNSHLN SILILQETCT
701: DRSGAMVVYA PVDFPAMQLV IGGGDSTNVA LLPSGFVILP DGSSSSAGGV GHKTCGSLLT VAFQILVNSQ PTAKLTVESV DTVYNLISCT IEKIRAALHC
801: DI

Best Arabidopsis Sequence Match ( AT3G61150.1 )
(BLAST)

001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST

Arabidopsis Description

HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.