CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043231_P001	Maize	nucleus	77.89	74.75
Os01t0788800-01	Rice	nucleus	40.66	49.13
TraesCS3B01G354900.1	Wheat	nucleus	43.82	48.76
TraesCS3A01G325800.1	Wheat	nucleus	43.68	48.61
HORVU3Hr1G077690.1	Barley	nucleus	42.89	48.58
TraesCS3D01G319200.1	Wheat	nucleus	43.42	48.32
GSMUA_Achr7P00210_001	Banana	nucleus	27.5	30.78
EES11464	Sorghum	nucleus	30.92	29.78
EES13460	Sorghum	mitochondrion, nucleus	30.0	29.19
EES02604	Sorghum	nucleus	30.53	28.47
EER89393	Sorghum	nucleus	26.18	28.43
EES14500	Sorghum	nucleus	29.74	27.76
EES05874	Sorghum	nucleus	25.39	27.3
KXG26935	Sorghum	nucleus	28.29	26.81
EER99222	Sorghum	nucleus	29.87	26.03
OQU87592	Sorghum	nucleus	23.55	25.18
OQU81266	Sorghum	nucleus	25.0	24.71
OQU81174	Sorghum	nucleus	23.95	24.66
EER98409	Sorghum	nucleus	22.24	23.15
KXG38837	Sorghum	nucleus	25.26	21.77

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EntrezGene:8054731	UniProt:C5XMC4	ncoils:Coil	EnsemblPlants:EES01587
ProteinID:EES01587	ProteinID:EES01587.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	PFAM:PF00046
PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF343
SMART:SM00234	SMART:SM00389	EnsemblPlantsGene:SORBI_3003G321500	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom
UniParc:UPI0001A84419	RefSeq:XP_002456467.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:64895680..64900967

Molecular Weight (calculated)

82539.0 Da

IEP (calculated)

5.538

GRAVY (calculated)

-0.176

Length

760 amino acids

Sequence
(BLAST)

001: MERGEPSGGD PSLMGLTGGI DDPSLMGPLY VIDYSSLMGP VDGVGGGLES QMNDTPENAP SNQSVEVQAN NGNEESPGDG AARITEIGSS TAGKNKKKRG
101: DRQDGPQPNK RSLHRVTSQQ LETLEGFFSI CAHPDDNQRR QLSESTGLLL HQVKFWFQNK RTQVKHLNGR EENYKLKVEN ETLKEENNRL KQLQNNIIAP
201: APCAKCIIDP GRLLLEKEVE RLKELNQMLQ QELQLLKSMD DGIPPMAMDS AVGNFHLDPL LENIFVVQHD EQMLANLAQN AAQELLILAN PSSALWLNVP
301: GGSFETLNMA AYTETFPGQM SADTITMNTE ATRASAVVML DPKSLVEFLM DAESYGTMFP GLVSAAATTK VYSCPTGREE CYDGAMQMMT VELVFPSPLV
401: AARKCTFVRC VKKLEQGAVA VVDVSLDDGA RCRKMPSGLV IQPIRYNTCK VTAIDHVVVD GTITHDLFAP CLSGLLFGAR RWLTSMARQC ARIRDVFQVT
501: NCTLNVTSRG RKTIMKLADN LLASFTSSVT AYPEDAWNFQ CGLGTEQDIK IMYKTQNEST SSGSPTAVVC ASASFLVPLH MGKAFELLKN NMLRAKWDVL
601: VNGGTVKEEV RVADGVGSGD AVSILHVKHG HGANRDTVMI LQNTFYDASG AFMVYSSLDK QLLEIIGDNQ AMSNISLFPA GFSLVPLTDP AGHDGAGIAQ
701: PGATVMTAGF QILMKLARGT GLCSRSVTSV INIMTDNIAN IKDALLNSHP VFYKSIQPVN

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.