Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019477_P001 | Maize | nucleus | 72.19 | 71.6 |
| OQU81266 | Sorghum | nucleus | 44.93 | 42.65 |
| OQU81174 | Sorghum | nucleus | 40.27 | 39.84 |
| TraesCS5B01G330300.1 | Wheat | nucleus | 36.85 | 35.82 |
| TraesCS5D01G335900.1 | Wheat | nucleus | 36.3 | 35.19 |
| TraesCS5A01G330200.1 | Wheat | nucleus | 35.21 | 34.54 |
| HORVU5Hr1G083940.3 | Barley | nucleus | 36.58 | 34.41 |
| TraesCS4A01G231300.2 | Wheat | nucleus | 36.16 | 34.2 |
| TraesCS4D01G082600.1 | Wheat | nucleus | 36.3 | 32.92 |
| TraesCS4B01G084700.16 | Wheat | extracellular, golgi | 36.03 | 32.43 |
| EES02604 | Sorghum | nucleus | 36.16 | 32.39 |
| EER99222 | Sorghum | nucleus | 38.22 | 32.0 |
| KXG26935 | Sorghum | nucleus | 34.25 | 31.17 |
| EES05874 | Sorghum | nucleus | 30.14 | 31.12 |
| EER89393 | Sorghum | nucleus | 28.63 | 29.86 |
| EES14500 | Sorghum | nucleus | 33.29 | 29.85 |
| EES13460 | Sorghum | mitochondrion, nucleus | 31.92 | 29.83 |
| EES11464 | Sorghum | nucleus | 31.37 | 29.02 |
| Os08t0292000-01 | Rice | nucleus | 30.55 | 28.19 |
| OQU87592 | Sorghum | nucleus | 25.07 | 25.74 |
| EES01587 | Sorghum | nucleus | 23.15 | 22.24 |
| KXG38837 | Sorghum | nucleus | 25.75 | 21.32 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | UniProt:C5X4D5 | ncoils:Coil | EnsemblPlants:EER98409 | ProteinID:EER98409 |
| ProteinID:EER98409.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008289 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF484 | SMART:SM00234 | SMART:SM00389 | EnsemblPlantsGene:SORBI_3002G115900 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | UniParc:UPI0001A8402F | RefSeq:XP_002461888.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr2:-:14264137..14267332
Molecular Weight (calculated)
79855.0 Da
IEP (calculated)
7.585
GRAVY (calculated)
-0.325
Length
730 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKEGQQQVN AYTDKDTDYT DGEGYNNEDY TQETETAASK RQKRHTPEQI RELISAYQQN HHPDEPTRRA LGEKIGLEAK QVQYWFQNQR SQMQAKAMEH
101: NSKAAQRQNA ALLAENASLR QAMLKRSCFT CGGATVPAEL LAENHRLLME NARLRGDYMR ATELLNQIVL QHSAAPGPAV QRPPAVVFRR PGAVVLPVDE
201: GASKQADRDT RLRRHAEAAM DQFVMLATSG EPLWLPTPDG EALSYLGYQK KATLPMHHGG LIMEATRETG IVRAFVADLI VKLTDAKRWC EMFPDVVASV
301: TTNGAITAGD FGSCIQLMNA ELWVQSPRLH NRRINFLRYN KRVAEGQWAV MDVSVDGILG PSAGRRTTDA TAVANNTTGC RLLPSGCLIE DMGKGNDYCK
401: ITWVVHAEYD ETMVPTLFRP LLRSGKAFGA HRWLASLQSQ YEYLTILHSS QVPRGDKDNT VAAISSMGKR GILELAKRMM AVFYSAVSGP VTQTSTSNLY
501: EWPASAGTDA RRTDDAAVRM VTWKKPGSVA DLVLSASTTV WLPNTPPQLV FQYLCDGQRR GEWDVFANGT AVAELCSVAT GPLHGNAVSV LYSNVTTDGT
601: DSKKVLMLQQ ACTDASRSMV VYAPVEEDFM RAVMNGGDHA SVFLMPSGFA VLPDGHGRVR DAPSSSSAPI GRDNHTAGSI LTMACQALLP GLSSSDKHAA
701: DRAFDDVGNL LCHVLKKIKA AVKANIVTPA
101: NSKAAQRQNA ALLAENASLR QAMLKRSCFT CGGATVPAEL LAENHRLLME NARLRGDYMR ATELLNQIVL QHSAAPGPAV QRPPAVVFRR PGAVVLPVDE
201: GASKQADRDT RLRRHAEAAM DQFVMLATSG EPLWLPTPDG EALSYLGYQK KATLPMHHGG LIMEATRETG IVRAFVADLI VKLTDAKRWC EMFPDVVASV
301: TTNGAITAGD FGSCIQLMNA ELWVQSPRLH NRRINFLRYN KRVAEGQWAV MDVSVDGILG PSAGRRTTDA TAVANNTTGC RLLPSGCLIE DMGKGNDYCK
401: ITWVVHAEYD ETMVPTLFRP LLRSGKAFGA HRWLASLQSQ YEYLTILHSS QVPRGDKDNT VAAISSMGKR GILELAKRMM AVFYSAVSGP VTQTSTSNLY
501: EWPASAGTDA RRTDDAAVRM VTWKKPGSVA DLVLSASTTV WLPNTPPQLV FQYLCDGQRR GEWDVFANGT AVAELCSVAT GPLHGNAVSV LYSNVTTDGT
601: DSKKVLMLQQ ACTDASRSMV VYAPVEEDFM RAVMNGGDHA SVFLMPSGFA VLPDGHGRVR DAPSSSSAPI GRDNHTAGSI LTMACQALLP GLSSSDKHAA
701: DRAFDDVGNL LCHVLKKIKA AVKANIVTPA
001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
Arabidopsis Description
HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.