Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G231300.2 | Wheat | nucleus | 85.47 | 89.12 |
| TraesCS4B01G084700.16 | Wheat | extracellular, golgi | 84.47 | 83.85 |
| EER98409 | Sorghum | nucleus | 32.92 | 36.3 |
| Zm00001d004234_P001 | Maize | nucleus | 31.55 | 35.93 |
| Zm00001d019477_P001 | Maize | nucleus | 32.8 | 35.87 |
| OQU81266 | Sorghum | nucleus | 34.16 | 35.76 |
| TraesCS5D01G335900.1 | Wheat | nucleus | 33.42 | 35.72 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 28.94 | 34.01 |
| OQU81174 | Sorghum | nucleus | 29.57 | 32.25 |
| TraesCS7D01G168900.1 | Wheat | nucleus | 5.96 | 32.21 |
| TraesCS5D01G320600.1 | Wheat | nucleus | 32.3 | 30.62 |
| TraesCS7D01G169000.1 | Wheat | nucleus | 5.59 | 30.2 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 26.96 | 29.64 |
| TraesCS6D01G237000.1 | Wheat | nucleus | 29.44 | 29.48 |
| TraesCS3D01G121300.1 | Wheat | nucleus | 7.58 | 29.33 |
| Zm00001d004230_P030 | Maize | nucleus | 29.44 | 29.12 |
| TraesCS4D01G228800.1 | Wheat | nucleus | 7.7 | 28.97 |
| TraesCS7D01G305200.1 | Wheat | nucleus | 28.32 | 28.64 |
| TraesCS1D01G037100.1 | Wheat | nucleus | 7.58 | 28.64 |
| TraesCS2D01G398600.1 | Wheat | nucleus | 27.83 | 28.57 |
| TraesCS3D01G121500.1 | Wheat | nucleus | 7.83 | 28.25 |
| TraesCS2D01G473700.1 | Wheat | nucleus | 27.08 | 28.09 |
| Os08t0292000-01 | Rice | nucleus | 25.22 | 25.66 |
| TraesCS7D01G217200.1 | Wheat | nucleus | 6.83 | 24.66 |
| TraesCS3D01G319200.1 | Wheat | nucleus | 20.0 | 23.57 |
| TraesCS1D01G197300.1 | Wheat | nucleus | 24.84 | 22.65 |
| TraesCS3D01G296500.3 | Wheat | nucleus | 20.99 | 21.28 |
| TraesCS3D01G121400.1 | Wheat | golgi, nucleus | 8.07 | 16.75 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF484 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START_lipid-bd_dom | EnsemblPlantsGene:TraesCS4D01G082600 | EnsemblPlants:TraesCS4D01G082600.1 | TIGR:cd00086 | TIGR:cd07812 | SEG:seg |
Description
No Description!
Coordinates
chr4D:-:56025816..56030159
Molecular Weight (calculated)
87668.8 Da
IEP (calculated)
7.167
GRAVY (calculated)
-0.179
Length
805 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSSNVALAI KEKNCPSKIA MVGEWQPQNG QVRDEIDPSI PTDDKDFISS NTGTTDDDKD VATADEDTTG AGSASNMRKR GRHANHQIRE LETMFQQCPH
101: PDENLRIALS KRVGMDPLRV KFWFQNRRNA KKNQNERQQN MVLRTENVML AEENRAMKAA MLKKTCPTCK GPMVFIKPLT PPELRRLHME NERLKAELLR
201: RTAYLHGVSA GTAGSSRILC DLNVDPVVPP PPRQDDLMAD TMGHCAPGGC ASSTAGGAEH AALERHVLAA LNELMMLMKQ GEPMWQPAAL GGEVLDHQLY
301: RATTLPGLLE LPPPGFTANG TRDTGMVMCT GADLVRIFMD ENCWLETFPD IVSSVSASDI GHGCICQGGV ILMNAGLRVL SPGVSSCNAK FLRQCQMIEQ
401: GVWAVVDVSL DAHGTSELRA WNTGLPGACR VLPSGCLIKD MNNGYCKVAM IVNAEYDKGF MPPLLHLLLS SGHTFSARRW LTSLQRRCEF LAQRLSPAYG
501: ISRAGGAITP EGRNNALELA RRMTESFYVA ISAPRGEAWR KVADWRGRES FQLAMHVLTP LAAPGEQAAG PVLCATTTVW LPEIPPQRVF DYICDGERRG
601: EWDVLAEGAR VQEEASLATA QFPLSGVSVL RPTAMVCILA SNILIATSVR IVVEPMWISN GWPFFFELPQ ARGRGRSSCN KKLILQQACS DAPCMVVAYA
701: PIDAGELKDV MHGGSRASLS LLPSGFAILP DGVGDMQNDP LDANPSGVDP MDHQRSRGSL VSVLWQTPLV GGNLTAQTVD NVGNNVSGSI MKIRAALHAK
801: RVMTV
101: PDENLRIALS KRVGMDPLRV KFWFQNRRNA KKNQNERQQN MVLRTENVML AEENRAMKAA MLKKTCPTCK GPMVFIKPLT PPELRRLHME NERLKAELLR
201: RTAYLHGVSA GTAGSSRILC DLNVDPVVPP PPRQDDLMAD TMGHCAPGGC ASSTAGGAEH AALERHVLAA LNELMMLMKQ GEPMWQPAAL GGEVLDHQLY
301: RATTLPGLLE LPPPGFTANG TRDTGMVMCT GADLVRIFMD ENCWLETFPD IVSSVSASDI GHGCICQGGV ILMNAGLRVL SPGVSSCNAK FLRQCQMIEQ
401: GVWAVVDVSL DAHGTSELRA WNTGLPGACR VLPSGCLIKD MNNGYCKVAM IVNAEYDKGF MPPLLHLLLS SGHTFSARRW LTSLQRRCEF LAQRLSPAYG
501: ISRAGGAITP EGRNNALELA RRMTESFYVA ISAPRGEAWR KVADWRGRES FQLAMHVLTP LAAPGEQAAG PVLCATTTVW LPEIPPQRVF DYICDGERRG
601: EWDVLAEGAR VQEEASLATA QFPLSGVSVL RPTAMVCILA SNILIATSVR IVVEPMWISN GWPFFFELPQ ARGRGRSSCN KKLILQQACS DAPCMVVAYA
701: PIDAGELKDV MHGGSRASLS LLPSGFAILP DGVGDMQNDP LDANPSGVDP MDHQRSRGSL VSVLWQTPLV GGNLTAQTVD NVGNNVSGSI MKIRAALHAK
801: RVMTV
001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
Arabidopsis Description
HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.