Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G119200.1 | Wheat | nucleus | 42.27 | 90.61 |
| TraesCS3D01G121300.1 | Wheat | nucleus | 46.65 | 87.02 |
| TraesCS4D01G228800.1 | Wheat | nucleus | 46.65 | 84.58 |
| TraesCS7D01G217200.1 | Wheat | nucleus | 42.01 | 73.09 |
| HORVU3Hr1G022070.1 | Barley | nucleus | 34.54 | 70.9 |
| TraesCS1D01G037100.1 | Wheat | nucleus | 35.31 | 64.32 |
| TraesCS3D01G121500.1 | Wheat | nucleus | 34.54 | 60.09 |
| TraesCS7D01G169000.1 | Wheat | nucleus | 11.34 | 29.53 |
| TraesCS7D01G168900.1 | Wheat | nucleus | 11.34 | 29.53 |
| TraesCS5D01G335900.1 | Wheat | nucleus | 18.56 | 9.56 |
| TraesCS6D01G237000.1 | Wheat | nucleus | 19.07 | 9.2 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 15.72 | 8.91 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 16.24 | 8.61 |
| TraesCS7D01G305200.1 | Wheat | nucleus | 17.53 | 8.54 |
| TraesCS2D01G473700.1 | Wheat | nucleus | 16.49 | 8.25 |
| TraesCS5D01G320600.1 | Wheat | nucleus | 18.04 | 8.24 |
| TraesCS4D01G082600.1 | Wheat | nucleus | 16.75 | 8.07 |
| TraesCS1D01G197300.1 | Wheat | nucleus | 16.49 | 7.25 |
| TraesCS2D01G398600.1 | Wheat | nucleus | 14.43 | 7.14 |
| TraesCS3D01G319200.1 | Wheat | nucleus | 11.86 | 6.73 |
| TraesCS3D01G296500.3 | Wheat | nucleus | 12.89 | 6.3 |
| Solyc11g022410.1.1 | Tomato | extracellular | 0.26 | 1.35 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G121400.1 | EnsemblPlantsGene:TraesCS3D01G121400 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF320 |
| PFAM:PF00046 | PFscan:PS50071 | SEG:seg | SMART:SM00389 | SUPFAM:SSF46689 | TIGR:cd00086 |
| MapMan:15.5.3.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:78095423..78098054
Molecular Weight (calculated)
43425.9 Da
IEP (calculated)
9.739
GRAVY (calculated)
-0.472
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAGVVHRG LASVVLAATG RSFPGHLAGL LLAAVWLGPR WSGLAGWFLQ SSGALGAAAR PLATGWHDGA GARPMAPARP RSGPFGPHLV RGYFMSPSRL
101: DRASRGPVCP GYRVQLVFAS AVEAPCWWPQ FGNKVDSRPW WRMLVDGRIG GKLAFSGVVG TFGSGEIPIT MDGEWLQHNS GVHNEFDLFM KSKHNHLFQD
201: NHSDEMDGLL EATTVVGNTD DANVVATDHG NNDGETHSEQ RMATRRAIYH CPRSEQIQQL EAVFRDCPYP DEKLRKDLSE TLGMSAQQVK FWFQNKRTFS
301: KGKMQRCETQ NRWVENERLK TERKAIMLAM QNKTCLKCRG VMVQTQDTSE RQRLYTENMR LKEDILHAIA YLKEGLRRNG MSLPWGRY
101: DRASRGPVCP GYRVQLVFAS AVEAPCWWPQ FGNKVDSRPW WRMLVDGRIG GKLAFSGVVG TFGSGEIPIT MDGEWLQHNS GVHNEFDLFM KSKHNHLFQD
201: NHSDEMDGLL EATTVVGNTD DANVVATDHG NNDGETHSEQ RMATRRAIYH CPRSEQIQQL EAVFRDCPYP DEKLRKDLSE TLGMSAQQVK FWFQNKRTFS
301: KGKMQRCETQ NRWVENERLK TERKAIMLAM QNKTCLKCRG VMVQTQDTSE RQRLYTENMR LKEDILHAIA YLKEGLRRNG MSLPWGRY
001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
Arabidopsis Description
HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.