Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004230_P030 | Maize | nucleus | 72.09 | 65.36 |
| OQU81266 | Sorghum | nucleus | 46.48 | 44.6 |
| EER98409 | Sorghum | nucleus | 39.84 | 40.27 |
| TraesCS5B01G330300.1 | Wheat | nucleus | 34.69 | 34.09 |
| TraesCS5D01G335900.1 | Wheat | nucleus | 34.42 | 33.73 |
| TraesCS5A01G330200.1 | Wheat | nucleus | 32.79 | 32.53 |
| HORVU5Hr1G083940.3 | Barley | nucleus | 33.74 | 32.09 |
| EES02604 | Sorghum | nucleus | 34.42 | 31.17 |
| TraesCS4A01G231300.2 | Wheat | nucleus | 31.44 | 30.05 |
| EER99222 | Sorghum | nucleus | 35.09 | 29.7 |
| TraesCS4D01G082600.1 | Wheat | nucleus | 32.25 | 29.57 |
| EES05874 | Sorghum | nucleus | 28.32 | 29.56 |
| EER89393 | Sorghum | nucleus | 27.91 | 29.43 |
| KXG26935 | Sorghum | nucleus | 31.84 | 29.3 |
| TraesCS4B01G084700.16 | Wheat | extracellular, golgi | 32.11 | 29.22 |
| EES11464 | Sorghum | nucleus | 30.76 | 28.77 |
| EES13460 | Sorghum | mitochondrion, nucleus | 30.22 | 28.55 |
| Os08t0292000-01 | Rice | nucleus | 29.54 | 27.56 |
| EES14500 | Sorghum | nucleus | 29.95 | 27.15 |
| EES01587 | Sorghum | nucleus | 24.66 | 23.95 |
| OQU87592 | Sorghum | nucleus | 23.04 | 23.91 |
| KXG38837 | Sorghum | nucleus | 27.1 | 22.68 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | UniProt:A0A1B6PJJ0 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR002913 | ProteinID:KXG25842.1 | EnsemblPlants:OQU81174 | ProteinID:OQU81174 | ProteinID:OQU81174.1 | PFAM:PF00046 |
| PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF484 |
| SMART:SM00234 | SMART:SM00389 | EnsemblPlantsGene:SORBI_3006G020700 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom |
| UniParc:UPI00081AC366 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:3564784..3572233
Molecular Weight (calculated)
80754.2 Da
IEP (calculated)
6.233
GRAVY (calculated)
-0.216
Length
738 amino acids
Sequence
(BLAST)
(BLAST)
001: MENERQQNNK GDDELIYLPL DVEEYDMDAL MGEEDHLNND KATGGEEHNI NNGSSSKRSK RFNVEQLQQL ESSFQECTHP DDAMRRELAA RVGIETRQVK
101: FWFQNRRTQT KVKSYATENN KFRQQNADLL AENMELHKEL TCSRCRDPTA EKWQLLDENA KLKEMCQRAN ADLTKLIQAA DRPPSVTPED LALVTSMNPL
201: SSNVGNSSSS TNNLQVTLLS YAECAIKEFD ILARNGPPLW LPIIGGNMLN IQEYTRLRFP RLHGICPQGF VVEATRDTAL VRGTASDLLG ILTNVPRWFE
301: TFPGIVAAVR DYHNVSSGIF GSGNGLIQEI NVDLSVESPC PPLRSMKFLR ISMQTANGDF AVVDVSINGV HEQEAGSKNK HTSCRLLPSG CLIQDMGDGH
401: CQVTWIVHAE YNETIVPPIF RQFFGSGQAF GASRWLASLK RHCEYKAVMH SSQVPTGGGL GVVTISALGR WNLLDLAQRM MAIFYKTTSA MATVEPGTIV
501: TMFGGRRGSA GEMVEPAVRM VLGNYYLGAM NGEPTFIKVL SATTTVWLPG TPPEHVFNYL CNGQRRGEWD TFVCAGAVQE LSSIATCPDL HGNVVSILHP
601: NVTNAANNTA LLLQQESIDV SCALVVFSLV EKTMIHSIMG GGHSTSSFVL LPSGFAILPD GHGRPHHAAA NSSSSALAGP NNRTPPGCLL TAAYQVQVSF
701: NNLGHPDVQG TFEDAGMRIC QAIKKIMAAV GTDLVVPA
101: FWFQNRRTQT KVKSYATENN KFRQQNADLL AENMELHKEL TCSRCRDPTA EKWQLLDENA KLKEMCQRAN ADLTKLIQAA DRPPSVTPED LALVTSMNPL
201: SSNVGNSSSS TNNLQVTLLS YAECAIKEFD ILARNGPPLW LPIIGGNMLN IQEYTRLRFP RLHGICPQGF VVEATRDTAL VRGTASDLLG ILTNVPRWFE
301: TFPGIVAAVR DYHNVSSGIF GSGNGLIQEI NVDLSVESPC PPLRSMKFLR ISMQTANGDF AVVDVSINGV HEQEAGSKNK HTSCRLLPSG CLIQDMGDGH
401: CQVTWIVHAE YNETIVPPIF RQFFGSGQAF GASRWLASLK RHCEYKAVMH SSQVPTGGGL GVVTISALGR WNLLDLAQRM MAIFYKTTSA MATVEPGTIV
501: TMFGGRRGSA GEMVEPAVRM VLGNYYLGAM NGEPTFIKVL SATTTVWLPG TPPEHVFNYL CNGQRRGEWD TFVCAGAVQE LSSIATCPDL HGNVVSILHP
601: NVTNAANNTA LLLQQESIDV SCALVVFSLV EKTMIHSIMG GGHSTSSFVL LPSGFAILPD GHGRPHHAAA NSSSSALAGP NNRTPPGCLL TAAYQVQVSF
701: NNLGHPDVQG TFEDAGMRIC QAIKKIMAAV GTDLVVPA
001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
Arabidopsis Description
HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.