Factsheet for PGSC0003DMT400019986

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400017808
PGSC0003DMT400019013
PGSC0003DMT400032816

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61150.1	PGSC0003DMT400019013	AT1G51355.1	21798944
AT3G61150.1	PGSC0003DMT400017808	AT3G27580.1	21798944
AT3G61150.1	PGSC0003DMT400032816	AT3G27580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0526300-00	Rice	nucleus	13.35	82.44
PGSC0003DMT400071377	Potato	nucleus	77.63	76.49
VIT_15s0048g02000.t01	Wine grape	nucleus	76.64	76.45
KRH40539	Soybean	nucleus	73.67	72.68
KRH00641	Soybean	nucleus	72.93	71.78
KRH48236	Soybean	nucleus	73.05	71.29
KRH65144	Soybean	nucleus	72.93	70.57
CDY18903	Canola	nucleus	58.34	66.95
CDX74762	Canola	nucleus	58.1	66.38
Bra037355.1-P	Field mustard	nucleus	63.16	64.68
CDY51143	Canola	nucleus	63.04	64.56
AT4G00730.1	Thale cress	nucleus	63.66	64.21
CDY07201	Canola	nucleus	62.55	64.21
CDX74347	Canola	nucleus	62.92	64.19
CDY45684	Canola	nucleus	62.18	64.16
CDX67855	Canola	nucleus	61.8	64.1
HORVU0Hr1G013510.1	Barley	cytosol	11.0	64.03
GSMUA_Achr1P18760_001	Banana	nucleus	59.83	64.02
CDX91894	Canola	nucleus	62.67	63.85
Bra003439.1-P	Field mustard	nucleus	61.8	63.69
Bra004934.1-P	Field mustard	nucleus	60.82	62.6
AT3G61150.1	Thale cress	nucleus	61.31	61.39
Os02t0674800-01	Rice	nucleus	59.58	59.95
Zm00001d040090_P002	Maize	nucleus	59.46	59.9
HORVU6Hr1G065300.3	Barley	nucleus	59.21	59.88
TraesCS6A01G255800.1	Wheat	nucleus	59.09	59.45
TraesCS6B01G269700.1	Wheat	nucleus	58.96	59.33
TraesCS6D01G237000.1	Wheat	nucleus	58.84	59.2
GSMUA_Achr3P12410_001	Banana	nucleus	54.26	59.16
EES02604	Sorghum	nucleus	59.58	59.14
Os04t0569100-01	Rice	nucleus	56.86	57.07
PGSC0003DMT400061859	Potato	nucleus	47.1	55.3
EER99222	Sorghum	nucleus	59.46	55.16
HORVU5Hr1G080700.2	Barley	nucleus	57.97	54.98
TraesCS5B01G315100.2	Wheat	nucleus	57.48	54.71
TraesCS5D01G320600.1	Wheat	nucleus	57.35	54.65
TraesCS5A01G314400.2	Wheat	nucleus	57.23	54.53
Zm00001d040091_P001	Maize	nucleus	17.43	54.02
PGSC0003DMT400029291	Potato	nucleus	46.35	53.8
KXG26935	Sorghum	nucleus	52.78	53.24
PGSC0003DMT400005277	Potato	nucleus	47.84	52.8
Zm00001d021236_P004	Maize	nucleus	58.71	52.6
PGSC0003DMT400037055	Potato	nucleus	49.94	49.75
TraesCS2D01G398600.1	Wheat	nucleus	47.71	49.23
TraesCS2B01G419200.1	Wheat	nucleus	47.71	49.17
Zm00001d026088_P002	Maize	nucleus	50.19	48.68
HORVU2Hr1G095210.1	Barley	nucleus	46.72	48.46
TraesCS2A01G401200.3	Wheat	nucleus	47.71	48.25
PGSC0003DMT400069312	Potato	nucleus	42.52	48.11
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	18.05	48.03
PGSC0003DMT400094124	Potato	nucleus	42.77	45.77
PGSC0003DMT400076898	Potato	cytosol	27.44	44.85
PGSC0003DMT400042908	Potato	nucleus	27.56	44.78
PGSC0003DMT400062468	Potato	cytosol	19.65	44.54
PGSC0003DMT400028197	Potato	cytosol	18.17	44.14
PGSC0003DMT400080861	Potato	nucleus	24.6	43.36
PGSC0003DMT400048971	Potato	nucleus	30.41	43.31
PGSC0003DMT400086035	Potato	nucleus	34.86	42.92
PGSC0003DMT400006770	Potato	nucleus	40.91	42.88
HORVU4Hr1G062510.2	Barley	cytosol	14.34	41.88
PGSC0003DMT400092271	Potato	nucleus	13.6	41.51
PGSC0003DMT400028195	Potato	nucleus	19.53	41.47
PGSC0003DMT400006155	Potato	nucleus	38.94	41.23
PGSC0003DMT400076902	Potato	nucleus	33.75	40.75
HORVU7Hr1G036950.2	Barley	cytosol	9.15	40.44
PGSC0003DMT400095083	Potato	cytosol	5.93	39.67
PGSC0003DMT400095329	Potato	cytosol	12.73	37.32
HORVU3Hr1G108430.1	Barley	cytosol	14.34	34.83
PGSC0003DMT400051268	Potato	cytosol	20.89	33.87
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	14.59	33.52
PGSC0003DMT400085057	Potato	cytosol	19.65	33.26
PGSC0003DMT400034503	Potato	cytosol, nucleus	26.82	31.86
PGSC0003DMT400037397	Potato	cytosol	18.54	30.55
PGSC0003DMT400038820	Potato	extracellular	13.72	30.49
PGSC0003DMT400051266	Potato	cytosol	14.34	29.82
PGSC0003DMT400036411	Potato	nucleus	19.16	29.52

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102604504	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0048497	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	UniProt:M1ACV5	PFAM:PF00046	PFAM:PF01852	EnsemblPlantsGene:PGSC0003DMG400007733	PGSC:PGSC0003DMG400007733
EnsemblPlants:PGSC0003DMT400019986	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF487
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0002967339
RefSeq:XP_006366174.1	SEG:seg	:	:	:	:

Description

HD domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400007733]

Coordinates

chr10:+:39183295..39191569

Molecular Weight (calculated)

89502.2 Da

IEP (calculated)

6.608

GRAVY (calculated)

-0.322

Length

809 amino acids

Sequence
(BLAST)

001: MNFGDFLDNS IIGDGNGGGA RIVTNSNNMR SNNNMSISTN LPSLAKSMFN SPRLSLALQT GREGGPGGVA VMAEENYYEA NDNNNNIIGR RSIEKEQAES
101: RSGSENLEGA SGDDEDDKPQ RKRKRYHRHT PQQIQQLELL FKECPHPDEK QRMELSRRLC LETRQVKFWF QNRRTQMKTQ LERHENSFLR QENDKLRAEN
201: MSIREAIMNP ICTTCSGPAI IGEVSFEEQH LRIENSRLKD ELDRVNALAG KFIGRPISLP LPNSTLELEV GNNGFRAKPD FGVGISNPLP VLPHTRQTTG
301: IEMSFDRSVY LELALAAMDE LIKMAKTDDP LWLRNRELCG GEVLNHDEYM RKFTPCIGLK PIKFVSEGSR ETGMVIINSL ALVETLMDSN KWAEMFPCLI
401: ASTSTIDVIS SGVGGTRNGA LQLMRSELQV LSPLVPIREF KFLRFCKQHA EGVWAVVDVS VDTIRETTTL DATTFSNCRR LPSGCVVQDM PNGYSKITWV
501: EHVEYDESVV HQLYRPLISA GMGFGAQKWV ATLQRQCECL AILMSSTVPS RDHTALTPSG RRSMLKLAQR MTNNFCSGVC ASSIHKWNKL NCVGNNVEDY
601: VRVLTRKSVD DPGEPPGIVV NAATSVWLPV SPQRLFEFLR DEQLRSEWDI LSNGGPMQEM AHIAKGQDHG NCVSLLRASV MNASQNMLIL QETCTDASGS
701: LVVYAPVDIP SMHLVMNGGD SAYVALLPSG FSIVPDGPGS RGPNLVKSLN NGPGPGPDMR VSGSLLTVAF QILVNSLPTA KLTVESVETV NNLISCTLQK
801: IKGALHCES

Best Arabidopsis Sequence Match ( AT4G00730.1 )
(BLAST)

001: MNFGSLFDNT PGGGSTGARL LSGLSYGNHT AATNVLPGGA MAQAAAAASL FSPPLTKSVY ASSGLSLALE QPERGTNRGE ASMRNNNNVG GGGDTFDGSV
101: NRRSREEEHE SRSGSDNVEG ISGEDQDAAD KPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLELSKR LCLETRQVKF WFQNRRTQMK TQLERHENAL
201: LRQENDKLRA ENMSIREAMR NPICTNCGGP AMLGDVSLEE HHLRIENARL KDELDRVCNL TGKFLGHHHN HHYNSSLELA VGTNNNGGHF AFPPDFGGGG
301: GCLPPQQQQS TVINGIDQKS VLLELALTAM DELVKLAQSE EPLWVKSLDG ERDELNQDEY MRTFSSTKPT GLATEASRTS GMVIINSLAL VETLMDSNRW
401: TEMFPCNVAR ATTTDVISGG MAGTINGALQ LMNAELQVLS PLVPVRNVNF LRFCKQHAEG VWAVVDVSID PVRENSGGAP VIRRLPSGCV VQDVSNGYSK
501: VTWVEHAEYD ENQIHQLYRP LLRSGLGFGS QRWLATLQRQ CECLAILISS SVTSHDNTSI TPGGRKSMLK LAQRMTFNFC SGISAPSVHN WSKLTVGNVD
601: PDVRVMTRKS VDDPGEPPGI VLSAATSVWL PAAPQRLYDF LRNERMRCEW DILSNGGPMQ EMAHITKGQD QGVSLLRSNA MNANQSSMLI LQETCIDASG
701: ALVVYAPVDI PAMHVVMNGG DSSYVALLPS GFAVLPDGGI DGGGSGDGDQ RPVGGGSLLT VAFQILVNNL PTAKLTVESV ETVNNLISCT VQKIRAALQC
801: ES

Arabidopsis Description

ANL2Homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.