Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 4
- nucleus 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g025490.1.1 | Tomato | cytosol | 53.85 | 80.99 |
| PGSC0003DMT400085057 | Potato | cytosol | 73.08 | 55.65 |
| PGSC0003DMT400051266 | Potato | cytosol | 54.95 | 51.41 |
| PGSC0003DMT400051268 | Potato | cytosol | 65.93 | 48.1 |
| Solyc04g025480.1.1 | Tomato | cytosol | 84.34 | 46.87 |
| PGSC0003DMT400036411 | Potato | nucleus | 54.95 | 38.1 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 66.76 | 35.68 |
| CDY62389 | Canola | cytosol | 39.29 | 29.24 |
| CDY69499 | Canola | cytosol | 20.6 | 24.67 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 45.05 | 22.97 |
| CDY16938 | Canola | nucleus | 40.66 | 22.42 |
| CDY44946 | Canola | nucleus | 39.56 | 22.22 |
| AT3G03260.1 | Thale cress | nucleus | 42.03 | 21.89 |
| Bra032003.1-P | Field mustard | nucleus | 41.21 | 21.77 |
| CDY43137 | Canola | nucleus | 40.66 | 21.48 |
| CDY42301 | Canola | nucleus | 40.66 | 21.45 |
| KRH36827 | Soybean | nucleus | 41.21 | 21.16 |
| Bra020066.1-P | Field mustard | nucleus | 39.56 | 21.11 |
| CDY67945 | Canola | nucleus | 39.56 | 20.9 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 34.62 | 20.9 |
| CDX85461 | Canola | cytosol | 40.38 | 20.85 |
| KRH11810 | Soybean | nucleus | 40.66 | 20.76 |
| PGSC0003DMT400062470 | Potato | cytosol, nucleus, plastid | 17.31 | 20.72 |
| Bra023611.1-P | Field mustard | nucleus | 40.11 | 20.71 |
| PGSC0003DMT400095083 | Potato | cytosol | 6.87 | 20.66 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 40.11 | 20.19 |
| PGSC0003DMT400033830 | Potato | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 19.51 | 20.17 |
| Bra003213.1-P | Field mustard | nucleus | 39.29 | 20.14 |
| CDY53691 | Canola | nucleus | 39.29 | 20.14 |
| PGSC0003DMT400037397 | Potato | cytosol | 26.92 | 19.96 |
| AT1G34650.1 | Thale cress | nucleus | 38.74 | 19.92 |
| Bra021363.1-P | Field mustard | nucleus | 39.56 | 19.81 |
| PGSC0003DMT400076898 | Potato | cytosol | 26.92 | 19.8 |
| CDY02713 | Canola | nucleus | 40.11 | 19.76 |
| CDY49937 | Canola | nucleus | 36.54 | 19.16 |
| CDY21211 | Canola | nucleus | 36.54 | 19.16 |
| KRH36826 | Soybean | nucleus | 37.09 | 18.93 |
| PGSC0003DMT400069312 | Potato | nucleus | 37.09 | 18.88 |
| AT5G17320.1 | Thale cress | nucleus | 36.81 | 18.66 |
| GSMUA_Achr10P... | Banana | nucleus | 34.89 | 18.62 |
| PGSC0003DMT400048971 | Potato | nucleus | 28.57 | 18.31 |
| GSMUA_Achr10P... | Banana | nucleus | 35.71 | 18.28 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 34.34 | 18.25 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 34.34 | 18.25 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 36.54 | 18.07 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 34.34 | 17.93 |
| Zm00001d018225_P001 | Maize | nucleus | 33.52 | 17.63 |
| Zm00001d052133_P001 | Maize | nucleus | 33.79 | 17.62 |
| PGSC0003DMT400061859 | Potato | nucleus | 33.24 | 17.56 |
| KRH42429 | Soybean | cytosol | 35.16 | 17.53 |
| Os06t0207966-00 | Rice | plastid | 12.64 | 17.49 |
| Zm00001d044973_P001 | Maize | nucleus | 32.97 | 17.42 |
| EES05874 | Sorghum | nucleus | 33.79 | 17.4 |
| PGSC0003DMT400062468 | Potato | cytosol | 17.03 | 17.37 |
| Zm00001d037140_P004 | Maize | nucleus | 32.69 | 17.32 |
| KRH42428 | Soybean | nucleus | 35.99 | 17.31 |
| PGSC0003DMT400029291 | Potato | nucleus | 32.97 | 17.22 |
| EER89393 | Sorghum | nucleus | 32.97 | 17.14 |
| PGSC0003DMT400005277 | Potato | nucleus | 34.07 | 16.92 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 34.34 | 16.91 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 31.32 | 15.62 |
| PGSC0003DMT400006155 | Potato | nucleus | 32.42 | 15.45 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 30.22 | 15.17 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 30.22 | 15.03 |
| PGSC0003DMT400095329 | Potato | cytosol | 11.26 | 14.86 |
| PGSC0003DMT400086035 | Potato | nucleus | 26.37 | 14.61 |
| PGSC0003DMT400094124 | Potato | nucleus | 29.95 | 14.42 |
| PGSC0003DMT400071377 | Potato | nucleus | 31.32 | 13.89 |
| PGSC0003DMT400006770 | Potato | nucleus | 29.4 | 13.86 |
| PGSC0003DMT400019986 | Potato | nucleus | 30.49 | 13.72 |
| PGSC0003DMT400037055 | Potato | nucleus | 28.85 | 12.93 |
| PGSC0003DMT400028195 | Potato | nucleus | 13.19 | 12.6 |
| PGSC0003DMT400028197 | Potato | cytosol | 10.44 | 11.41 |
| PGSC0003DMT400042908 | Potato | nucleus | 15.11 | 11.04 |
| PGSC0003DMT400076902 | Potato | nucleus | 19.78 | 10.75 |
| PGSC0003DMT400080861 | Potato | nucleus | 11.81 | 9.37 |
| PGSC0003DMT400092271 | Potato | nucleus | 3.3 | 4.53 |
| TraesCSU01G244000.1 | Wheat | nucleus | 0.82 | 1.46 |
| TraesCSU01G150000.1 | Wheat | nucleus | 0.82 | 1.38 |
| HORVU3Hr1G022170.1 | Barley | cytosol | 0.0 | 0.0 |
| Os06t0208100-00 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400038820 | EnsemblPlantsGene:PGSC0003DMG400015002 | Gene3D:3.30.530.20 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 |
| InterPro:IPR002913 | InterPro:IPR023393 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF504 |
| PFAM:PF01852 | PFscan:PS50848 | PGSC:PGSC0003DMG400015002 | SMART:SM00234 | SUPFAM:SSF55961 | UniParc:UPI0002955931 |
| UniProt:M1B7E6 | MapMan:15.5.3.3 | : | : | : | : |
Description
Homeobox protein GLABRA2 [Source:PGSC_GENE;Acc:PGSC0003DMG400015002]
Coordinates
chr4:+:15961828..15967921
Molecular Weight (calculated)
41637.3 Da
IEP (calculated)
6.623
GRAVY (calculated)
-0.136
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALLQFDIS ISFESSIGNA CLFHREDYEK IFSNPNQPGK SPTTRFESSK VSGVVPMNAI ELIQNFLDPI KWMNMFPTIV TKARTIEVLD SGDLGGSIQL
101: MYEKLHILSP LVEARDYYFV RCFRKLDEAT WIMVDVSYDL IKDIQSSVPS HAWKFPSGCA IQDLDDGESR VTWIEHVQVD EKISVHHMFL PLLVVRQTYG
201: AKRWIVTLQR MCERYNVEVG ATCLPRHDLK EVLNDPEGFE NVMQISLRMV KRFCEILSMT EKLDFPTSSQ FKSEDRVSIR KNEEITQQKG FIVTAATSLW
301: LPLSCRNVFN FLKDNKSRGQ WDVLAGGNIV TELARIKTGC VRGNNITIIQ KIIVTPRDWS LDVA
101: MYEKLHILSP LVEARDYYFV RCFRKLDEAT WIMVDVSYDL IKDIQSSVPS HAWKFPSGCA IQDLDDGESR VTWIEHVQVD EKISVHHMFL PLLVVRQTYG
201: AKRWIVTLQR MCERYNVEVG ATCLPRHDLK EVLNDPEGFE NVMQISLRMV KRFCEILSMT EKLDFPTSSQ FKSEDRVSIR KNEEITQQKG FIVTAATSLW
301: LPLSCRNVFN FLKDNKSRGQ WDVLAGGNIV TELARIKTGC VRGNNITIIQ KIIVTPRDWS LDVA
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.