Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028295.1-P | Field mustard | nucleus | 99.11 | 97.8 |
| CDY31916 | Canola | nucleus | 96.29 | 96.29 |
| AT5G52170.2 | Thale cress | nucleus | 79.79 | 78.17 |
| KRH35356 | Soybean | nucleus | 55.57 | 48.89 |
| KRG91457 | Soybean | nucleus | 55.57 | 48.13 |
| CDY18903 | Canola | nucleus | 50.37 | 48.09 |
| CDX74762 | Canola | nucleus | 49.93 | 47.46 |
| CDY39874 | Canola | plasma membrane | 13.52 | 47.4 |
| CDX89415 | Canola | cytosol, mitochondrion | 12.18 | 46.07 |
| VIT_16s0100g00670.t01 | Wine grape | nucleus | 53.19 | 45.72 |
| CDX67855 | Canola | nucleus | 52.9 | 45.64 |
| CDY51143 | Canola | nucleus | 53.49 | 45.57 |
| CDY45684 | Canola | nucleus | 53.05 | 45.54 |
| CDY07201 | Canola | nucleus | 53.05 | 45.3 |
| CDX91894 | Canola | nucleus | 53.34 | 45.21 |
| CDX74347 | Canola | nucleus | 53.19 | 45.15 |
| KRH38560 | Soybean | nucleus | 51.26 | 44.46 |
| KRH09109 | Soybean | plastid | 50.37 | 43.74 |
| CDX90879 | Canola | nucleus | 46.51 | 43.72 |
| CDY21319 | Canola | nucleus | 46.21 | 43.44 |
| CDX76399 | Canola | nucleus | 46.06 | 43.36 |
| CDY16639 | Canola | nucleus | 46.81 | 42.97 |
| CDX94586 | Canola | nucleus | 46.66 | 42.9 |
| CDY27417 | Canola | nucleus | 45.47 | 42.86 |
| CDX98703 | Canola | nucleus | 43.69 | 42.3 |
| CDX94054 | Canola | nucleus | 43.54 | 42.16 |
| CDY66622 | Canola | nucleus | 45.32 | 41.72 |
| PGSC0003DMT400062470 | Potato | cytosol, nucleus, plastid | 18.72 | 41.45 |
| CDY06167 | Canola | nucleus | 43.54 | 40.69 |
| CDX79091 | Canola | nucleus | 44.87 | 40.48 |
| CDY23096 | Canola | nucleus | 7.73 | 39.39 |
| CDX96744 | Canola | nucleus | 39.23 | 39.23 |
| CDY10041 | Canola | nucleus | 43.39 | 39.09 |
| CDX68229 | Canola | nucleus | 40.42 | 38.69 |
| CDX83884 | Canola | nucleus | 39.38 | 38.69 |
| CDY71572 | Canola | nucleus | 22.59 | 38.68 |
| PGSC0003DMT400037055 | Potato | nucleus | 46.36 | 38.42 |
| CDY19185 | Canola | nucleus | 38.93 | 38.42 |
| Solyc03g026070.2.1 | Tomato | nucleus | 45.77 | 38.17 |
| CDY26204 | Canola | nucleus | 36.11 | 38.15 |
| CDY11109 | Canola | nucleus | 40.12 | 38.03 |
| CDY42097 | Canola | nucleus | 29.12 | 37.91 |
| CDY26205 | Canola | nucleus | 38.78 | 37.83 |
| CDX96471 | Canola | nucleus | 40.12 | 37.6 |
| CDX72984 | Canola | nucleus | 39.82 | 37.48 |
| PGSC0003DMT400042908 | Potato | nucleus | 27.34 | 36.95 |
| PGSC0003DMT400076898 | Potato | cytosol | 27.04 | 36.77 |
| PGSC0003DMT400062468 | Potato | cytosol | 19.47 | 36.69 |
| CDY12213 | Canola | nucleus | 38.63 | 36.52 |
| CDY49515 | Canola | plasma membrane | 43.69 | 36.25 |
| PGSC0003DMT400086035 | Potato | nucleus | 35.07 | 35.92 |
| Solyc06g035940.2.1 | Tomato | nucleus | 35.96 | 35.8 |
| PGSC0003DMT400080861 | Potato | nucleus | 24.37 | 35.73 |
| CDY46842 | Canola | nucleus | 43.69 | 35.42 |
| CDY48272 | Canola | nucleus | 37.0 | 35.37 |
| CDY19129 | Canola | nucleus | 38.04 | 35.21 |
| CDY15339 | Canola | nucleus | 38.04 | 35.02 |
| CDX89416 | Canola | nucleus | 33.43 | 34.67 |
| CDY30748 | Canola | endoplasmic reticulum | 29.87 | 34.24 |
| CDX94443 | Canola | cytosol | 31.8 | 34.08 |
| PGSC0003DMT400028197 | Potato | cytosol | 16.79 | 33.93 |
| PGSC0003DMT400028195 | Potato | nucleus | 19.17 | 33.86 |
| Solyc06g050160.2.1 | Tomato | nucleus | 32.69 | 33.69 |
| PGSC0003DMT400076902 | Potato | nucleus | 33.14 | 33.28 |
| CDX67929 | Canola | nucleus | 37.89 | 32.57 |
| CDX79408 | Canola | nucleus | 37.44 | 32.31 |
| CDX85461 | Canola | cytosol | 33.28 | 31.77 |
| PGSC0003DMT400092271 | Potato | nucleus | 12.04 | 30.57 |
| CDY53691 | Canola | nucleus | 32.1 | 30.42 |
| CDY62389 | Canola | cytosol | 21.99 | 30.27 |
| CDX76559 | Canola | nucleus | 32.99 | 30.25 |
| CDY02713 | Canola | nucleus | 33.14 | 30.18 |
| CDY08866 | Canola | nucleus | 32.99 | 30.16 |
| CDY43458 | Canola | nucleus | 36.26 | 30.05 |
| CDY43137 | Canola | nucleus | 30.46 | 29.75 |
| CDY67945 | Canola | nucleus | 30.46 | 29.75 |
| CDY03177 | Canola | nucleus | 36.4 | 29.66 |
| CDY69499 | Canola | cytosol | 13.37 | 29.61 |
| CDY21211 | Canola | nucleus | 30.46 | 29.54 |
| CDY49937 | Canola | nucleus | 30.46 | 29.54 |
| CDY33492 | Canola | nucleus | 34.92 | 29.52 |
| CDX77711 | Canola | nucleus | 35.81 | 29.28 |
| CDY42301 | Canola | nucleus | 29.87 | 29.13 |
| CDY16938 | Canola | nucleus | 28.53 | 29.09 |
| CDY44946 | Canola | nucleus | 27.04 | 28.09 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:A0A078EEN8 | EnsemblPlants:CDY00515 | ProteinID:CDY00515 | ProteinID:CDY00515.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0008289 |
| EnsemblPlantsGene:GSBRNA2T00110242001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 |
| PFAM:PF01852 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF350 | SMART:SM00234 |
| SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | UniParc:UPI0004EE6D29 | SEG:seg |
Description
BnaA10g07580D
Coordinates
chrLK031919:+:985472..988527
Molecular Weight (calculated)
74582.9 Da
IEP (calculated)
7.054
GRAVY (calculated)
-0.393
Length
673 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGDFDISKG DDEFESDSFE AMSGDDDDKH EQRPKKKKKM SKYRRHTSYQ IQELESFFKV CPHPNEKQRL ELGSKLSLES KQIKFWFQNR RTQMKTQLER
101: HENAILRQEN EKLRVENGIL KEAMRSPPTC NNCGGAATPG EVSHEQQQLR MENAKLKYEL DKLCALSNRF IGGSISLEQP SNGGVGSQDL SLGHGFTRGT
201: STFMDIAAVA MDELIRLAEV DNPLWTKCSK SERDSMKHDQ YTSIFAGSSR ETGLVLINSS TLVETLMDTN RWAEMFESIV AVASTVEVIS NGSGGSRNGA
301: LLLMQAEFQV MSPLVPIRQV KFLRYCKQHG DGLWAVVDVS YDVNRESQDL KSYGGLKRLP SGCIIQDIGN GCSKVTWIEH SEYEGSHIHP LYQQLLGSSV
401: GLGATKWLAT LQRRCESYTT LLSSQDQTGL PLAGTKSTLT LAQRMKRNFY SGITGSPIHK WEKLVAENVG QETRILTRKS LQPSGVVLSA ATSMWLPVTQ
501: QRLFEFLCDS KCRNQWDILC NGASMENMLL IPQRQSEGRC VSLLQHAGKH QNESSMLILQ ETWSDASGAL VVYAPVDVPS MNMVMSGGDS ANVALLPSGF
601: SISPDGSSSW SDQIDKNGGL VNHESKGCLL TVGFQILVNS VPTTKLNMES VQTVNNLIAC TIHKIKAALS IPA
101: HENAILRQEN EKLRVENGIL KEAMRSPPTC NNCGGAATPG EVSHEQQQLR MENAKLKYEL DKLCALSNRF IGGSISLEQP SNGGVGSQDL SLGHGFTRGT
201: STFMDIAAVA MDELIRLAEV DNPLWTKCSK SERDSMKHDQ YTSIFAGSSR ETGLVLINSS TLVETLMDTN RWAEMFESIV AVASTVEVIS NGSGGSRNGA
301: LLLMQAEFQV MSPLVPIRQV KFLRYCKQHG DGLWAVVDVS YDVNRESQDL KSYGGLKRLP SGCIIQDIGN GCSKVTWIEH SEYEGSHIHP LYQQLLGSSV
401: GLGATKWLAT LQRRCESYTT LLSSQDQTGL PLAGTKSTLT LAQRMKRNFY SGITGSPIHK WEKLVAENVG QETRILTRKS LQPSGVVLSA ATSMWLPVTQ
501: QRLFEFLCDS KCRNQWDILC NGASMENMLL IPQRQSEGRC VSLLQHAGKH QNESSMLILQ ETWSDASGAL VVYAPVDVPS MNMVMSGGDS ANVALLPSGF
601: SISPDGSSSW SDQIDKNGGL VNHESKGCLL TVGFQILVNS VPTTKLNMES VQTVNNLIAC TIHKIKAALS IPA
001: MNGDLEVDMS RGDFNPSFFL GKLKDDEFES RSLSDDSFDA MSGDEDKQEQ RPKKKKRKTK YHRHTSYQIQ ELESFFKECP HPNEKQRLEL GKKLTLESKQ
101: IKFWFQNRRT QMKTQLERHE NVILKQENEK LRLENSFLKE SMRGSLCIDC GGAVIPGEVS FEQHQLRIEN AKLKEELDRI CALANRFIGG SISLEQPSNG
201: GIGSQHLPIG HCVSGGTSLM FMDLAMEAMD ELLKLAELET SLWSSKSEKG SMNHFPGSRE TGLVLINSLA LVETLMDTNK WAEMFECIVA VASTLEVISN
301: GSDGSRNGSI LLMQAEFQVM SPLVPIKQKK FLRYCKQHGD GLWAVVDVSY DINRGNENLK SYGGSKMFPS GCIIQDIGNG CSKVTWIEHS EYEESHTHSL
401: YQPLLSSSVG LGATKWLATL QRQCESFTML LSSEDHTGLS HAGTKSILKL AQRMKLNFYS GITASCIHKW EKLLAENVGQ DTRILTRKSL EPSGIVLSAA
501: TSLWLPVTQQ RLFEFLCDGK CRNQWDILSN GASMENTLLV PKGQQEGSCV SLLRAAGNDQ NESSMLILQE TWNDVSGALV VYAPVDIPSM NTVMSGGDSA
601: YVALLPSGFS ILPDGSSSSS DQFDTDGGLV NQESKGCLLT VGFQILVNSL PTAKLNVESV ETVNNLIACT IHKIRAALRI PA
101: IKFWFQNRRT QMKTQLERHE NVILKQENEK LRLENSFLKE SMRGSLCIDC GGAVIPGEVS FEQHQLRIEN AKLKEELDRI CALANRFIGG SISLEQPSNG
201: GIGSQHLPIG HCVSGGTSLM FMDLAMEAMD ELLKLAELET SLWSSKSEKG SMNHFPGSRE TGLVLINSLA LVETLMDTNK WAEMFECIVA VASTLEVISN
301: GSDGSRNGSI LLMQAEFQVM SPLVPIKQKK FLRYCKQHGD GLWAVVDVSY DINRGNENLK SYGGSKMFPS GCIIQDIGNG CSKVTWIEHS EYEESHTHSL
401: YQPLLSSSVG LGATKWLATL QRQCESFTML LSSEDHTGLS HAGTKSILKL AQRMKLNFYS GITASCIHKW EKLLAENVGQ DTRILTRKSL EPSGIVLSAA
501: TSLWLPVTQQ RLFEFLCDGK CRNQWDILSN GASMENTLLV PKGQQEGSCV SLLRAAGNDQ NESSMLILQE TWNDVSGALV VYAPVDIPSM NTVMSGGDSA
601: YVALLPSGFS ILPDGSSSSS DQFDTDGGLV NQESKGCLLT VGFQILVNSL PTAKLNVESV ETVNNLIACT IHKIRAALRI PA
Arabidopsis Description
HDG7homeodomain GLABROUS 7 [Source:TAIR;Acc:AT5G52170]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.