Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
22160430
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G065600.1 | Wheat | plastid | 90.16 | 99.43 |
| TraesCS2B01G079400.1 | Wheat | plastid | 90.16 | 99.43 |
| TraesCS2A01G067300.1 | Wheat | plastid | 90.16 | 99.43 |
| TraesCS2B01G079200.1 | Wheat | plastid | 88.08 | 97.14 |
| TraesCS2B01G079300.1 | Wheat | plastid | 87.56 | 97.13 |
| TraesCS2B01G079100.1 | Wheat | plastid | 87.05 | 96.55 |
| TraesCS5B01G162800.1 | Wheat | plastid | 84.46 | 93.14 |
| TraesCS5B01G162600.1 | Wheat | plastid | 84.46 | 93.14 |
| TraesCS2B01G078900.2 | Wheat | plastid | 83.42 | 87.03 |
| Os12t0291400-01 | Rice | plastid | 76.17 | 84.0 |
| Os12t0274700-01 | Rice | plastid | 74.09 | 81.71 |
| Os12t0291100-01 | Rice | plastid | 74.09 | 81.71 |
| Os12t0292400-01 | Rice | extracellular | 74.09 | 81.71 |
| GSMUA_Achr8P18400_001 | Banana | cytosol | 10.36 | 76.92 |
| Zm00001d052595_P001 | Maize | plastid | 67.36 | 76.47 |
| Zm00001d004894_P001 | Maize | plastid | 66.84 | 75.88 |
| EES09292 | Sorghum | plastid | 65.8 | 75.15 |
| GSMUA_Achr10P... | Banana | plasma membrane | 59.59 | 72.78 |
| GSMUA_Achr6P09710_001 | Banana | plastid | 59.07 | 72.15 |
| GSMUA_Achr2P22730_001 | Banana | unclear | 57.51 | 70.25 |
| PGSC0003DMT400067905 | Potato | plastid | 56.99 | 69.18 |
| PGSC0003DMT400032975 | Potato | mitochondrion, plastid | 60.62 | 65.0 |
| Bra028181.1-P | Field mustard | plastid | 52.85 | 62.96 |
| PGSC0003DMT400062138 | Potato | cytosol, plastid | 58.03 | 61.88 |
| PGSC0003DMT400050381 | Potato | cytosol, extracellular, plastid | 58.03 | 61.88 |
| AT1G67090.1 | Thale cress | plastid | 57.51 | 61.67 |
| Solyc02g085950.2.1 | Tomato | extracellular | 57.51 | 61.67 |
| Solyc02g063150.2.1 | Tomato | nucleus, plastid | 57.51 | 61.33 |
| AT5G38420.1 | Thale cress | plastid | 57.51 | 61.33 |
| Solyc03g034220.2.1 | Tomato | plastid | 56.99 | 61.11 |
| KRH18247 | Soybean | nucleus, plastid | 55.96 | 60.67 |
| KRG93871 | Soybean | plastid | 55.96 | 60.67 |
| KRG93867 | Soybean | plastid | 55.96 | 60.67 |
| Os12t0291200-00 | Rice | plastid | 30.05 | 60.42 |
| AT5G38430.1 | Thale cress | plastid | 56.48 | 60.22 |
| AT5G38410.3 | Thale cress | plastid | 58.03 | 60.22 |
| Bra028174.1-P | Field mustard | plastid | 55.96 | 59.67 |
| CDY71122 | Canola | plastid | 55.96 | 59.67 |
| CDY52468 | Canola | plastid | 55.96 | 59.67 |
| CDY01665 | Canola | plastid | 55.96 | 59.67 |
| CDY67657 | Canola | plastid | 55.44 | 59.12 |
| Bra025431.1-P | Field mustard | plastid | 55.44 | 59.12 |
| CDX74525 | Canola | plastid | 55.44 | 59.12 |
| CDX74532 | Canola | plastid | 55.44 | 59.12 |
| CDY01671 | Canola | plastid | 55.44 | 59.12 |
| Bra034027.1-P | Field mustard | plastid | 54.92 | 58.56 |
| Bra034029.1-P | Field mustard | plastid | 54.92 | 58.56 |
| CDX67402 | Canola | plastid | 54.92 | 58.56 |
| CDY12613 | Canola | plastid | 54.92 | 58.56 |
| CDY42338 | Canola | plastid | 54.92 | 58.56 |
| VIT_17s0000g03690.t01 | Wine grape | plastid | 54.4 | 58.33 |
| Bra028406.1-P | Field mustard | plastid | 54.4 | 58.01 |
| CDY12616 | Canola | plastid | 53.37 | 56.91 |
| Bra034024.1-P | Field mustard | plastid | 53.37 | 56.91 |
| CDX99682 | Canola | plastid | 55.44 | 56.61 |
| CDY42337 | Canola | plastid | 52.85 | 56.35 |
| CDY12612 | Canola | cytosol | 34.72 | 55.37 |
| CDY42341 | Canola | plastid | 51.81 | 53.76 |
| KRG93872 | Soybean | plastid | 36.27 | 51.85 |
| KRH46925 | Soybean | plastid | 23.83 | 51.11 |
| KRG93873 | Soybean | plastid | 26.94 | 49.52 |
| KRH01757 | Soybean | plastid | 36.79 | 47.33 |
| KRG99965 | Soybean | plastid | 30.05 | 44.27 |
| KRG99964 | Soybean | plastid | 22.28 | 43.0 |
| KRH15458 | Soybean | plastid | 29.53 | 35.85 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G079500.1 | EnsemblPlantsGene:TraesCS2B01G079500 | Gene3D:3.30.190.10 | InterPro:IPR036385 | InterPro:RuBisCO_sc | InterPro:RuBisCO_sc_dom |
| InterPro:RuBisCO_ssu_N | InterPro:RuBisCO_ssu_sf | KEGG:00630+4.1.1.39 | KEGG:00710+4.1.1.39 | PANTHER:PTHR31262 | PANTHER:PTHR31262:SF0 |
| PFAM:PF00101 | PFAM:PF12338 | PRINTS:PR00152 | SMART:SM00961 | SUPFAM:SSF55239 | TIGR:cd03527 |
| MapMan:1.2.1.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:44360794..44361889
Molecular Weight (calculated)
21245.7 Da
IEP (calculated)
9.422
GRAVY (calculated)
-0.117
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGVAKLAIA SPPSNSRAMA PAVMASSATT VAPFQGLKST AGLPVSRRSG SAGLSSVSNG GRIRCMQVWP IEGIKKFETL SYLPPLSTEA LLKQVDYLIR
101: SKWVPCLEFS KVGFVFREHN SSPGYYDGRY WTMWKLPMFG CTDATQVLSE VEEVKKEYPD AYVRVIGFDN MRQVQCVSFI AFRPPGCEES GKA
101: SKWVPCLEFS KVGFVFREHN SSPGYYDGRY WTMWKLPMFG CTDATQVLSE VEEVKKEYPD AYVRVIGFDN MRQVQCVSFI AFRPPGCEES GKA
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
Arabidopsis Description
RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.