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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:
  • plastid 9
  • vacuole 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, plastid
Any Predictor:mitochondrion, plastid, vacuole
BaCelLo:plastid
ChloroP:plastid
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 cytosol: 22313117
extracellular: 22313117
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400001405
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400012712
PGSC0003DMT400015729
PGSC0003DMT400017657
PGSC0003DMT400021076
PGSC0003DMT400027591
PGSC0003DMT400036790
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400040741
PGSC0003DMT400053345
PGSC0003DMT400069515
PGSC0003DMT400074101
PGSC0003DMT400076710
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G67090.1 PGSC0003DMT400040141 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040142 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040143 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040144 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040206 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400040207 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400077934 AT3G46090.1 17259181
AT1G67090.1 PGSC0003DMT400015729 AT5G35750.1 18642946
AT5G38420.1 PGSC0003DMT400021076 AT2G41370.1 21798944
AT5G38420.1 PGSC0003DMT400027591 AT2G41370.1 21798944
AT5G38420.1 PGSC0003DMT400076710 AT2G41370.1 21798944
AT5G38420.1 PGSC0003DMT400040741 AT3G04240.1 21798944
AT5G38420.1 PGSC0003DMT400036790 AT3G17860.1 21798944
AT5G38420.1 PGSC0003DMT400074101 AT3G17860.1 21798944
AT5G38420.1 PGSC0003DMT400001405 AT3G27960.1 21798944
AT5G38420.1 PGSC0003DMT400012712 AT4G08150.1 21798944
AT5G38420.1 PGSC0003DMT400017657 AT5G11980.1 21798944
AT5G38420.1 PGSC0003DMT400001474 AT5G24660.1 21798944
AT5G38420.1 PGSC0003DMT400001475 AT5G24660.1 21798944
AT5G38420.1 PGSC0003DMT400001476 AT5G24660.1 21798944
AT5G38420.1 PGSC0003DMT400069515 AT5G24660.1 21798944
AT5G38430.1 PGSC0003DMT400053345 AT2G39930.1 21798944
AT5G38430.1 PGSC0003DMT400040141 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040142 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040143 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040144 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040206 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400040207 AT3G46090.1 17259181
AT5G38430.1 PGSC0003DMT400077934 AT3G46090.1 17259181
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400067905 Potato plastid 83.98 95.6
PGSC0003DMT400032975 Potato mitochondrion, plastid 93.92 94.44
Solyc03g034220.2.1 Tomato plastid 92.82 93.33
PGSC0003DMT400062138 Potato cytosol, plastid 90.61 90.61
KRH18247 Soybean nucleus, plastid 77.9 79.21
KRG93867 Soybean plastid 77.35 78.65
KRG93871 Soybean plastid 77.35 78.65
CDY52468 Canola plastid 74.59 74.59
Bra028181.1-P Field mustard plastid 66.3 74.07
Bra025431.1-P Field mustard plastid 74.03 74.03
CDY71122 Canola plastid 73.48 73.48
AT5G38430.1 Thale cress plastid 73.48 73.48
Bra028174.1-P Field mustard plastid 73.48 73.48
CDY01665 Canola plastid 73.48 73.48
GSMUA_Achr2P22730_001 Banana unclear 64.09 73.42
KRH46925 Soybean plastid 36.46 73.33
CDY01671 Canola plastid 72.93 72.93
CDX74532 Canola plastid 72.93 72.93
CDX67402 Canola plastid 72.93 72.93
CDX74525 Canola plastid 72.38 72.38
Bra028406.1-P Field mustard plastid 72.38 72.38
AT5G38420.1 Thale cress plastid 72.38 72.38
CDY67657 Canola plastid 71.82 71.82
AT1G67090.1 Thale cress plastid 71.27 71.67
GSMUA_Achr6P09710_001 Banana plastid 62.43 71.52
AT5G38410.3 Thale cress plastid 73.48 71.51
CDX99682 Canola plastid 74.03 70.9
GSMUA_Achr10P... Banana plasma membrane 61.88 70.89
VIT_17s0000g03690.t01 Wine grape plastid 69.61 70.0
KRG93872 Soybean plastid 50.83 68.15
Os12t0274700-01 Rice plastid 65.75 68.0
Os12t0292400-01 Rice extracellular 65.19 67.43
Os12t0291400-01 Rice plastid 65.19 67.43
Os12t0291100-01 Rice plastid 65.19 67.43
Bra034027.1-P Field mustard plastid 67.4 67.4
Bra034029.1-P Field mustard plastid 67.4 67.4
CDY12613 Canola plastid 67.4 67.4
Bra034024.1-P Field mustard plastid 66.85 66.85
CDY12616 Canola plastid 66.3 66.3
EES09292 Sorghum plastid 61.88 66.27
Zm00001d004894_P001 Maize plastid 61.33 65.29
CDY42337 Canola plastid 65.19 65.19
CDY42338 Canola plastid 65.19 65.19
HORVU1Hr1G035720.2 Barley plastid 62.98 64.77
KRG93873 Soybean plastid 37.57 64.76
HORVU2Hr1G010690.1 Barley plastid 62.43 64.57
HORVU2Hr1G010630.1 Barley plastid 62.43 64.57
HORVU5Hr1G038630.1 Barley plastid 62.43 64.57
HORVU5Hr1G051010.2 Barley plastid 62.43 64.57
TraesCS2A01G066700.1 Wheat plastid 61.88 64.37
TraesCS2D01G065300.1 Wheat plastid 61.88 64.37
TraesCS2D01G065500.1 Wheat plastid 58.56 64.24
TraesCS2B01G079200.1 Wheat plastid 61.88 64.0
TraesCS2A01G067300.1 Wheat plastid 61.88 64.0
TraesCS2B01G079400.1 Wheat plastid 61.88 64.0
TraesCS2D01G065200.1 Wheat plastid 61.88 64.0
TraesCS2D01G065600.1 Wheat plastid 61.88 64.0
TraesCS5A01G165400.2 Wheat plastid 61.88 64.0
TraesCS5A01G165700.1 Wheat plastid 61.88 64.0
TraesCS5B01G162600.1 Wheat plastid 61.88 64.0
TraesCS5B01G162800.1 Wheat plastid 61.88 64.0
TraesCS5D01G169600.2 Wheat plastid 61.88 64.0
HORVU5Hr1G033540.2 Barley plastid 61.88 64.0
TraesCS5D01G169900.2 Wheat plastid 61.88 64.0
TraesCS2B01G079300.1 Wheat plastid 61.33 63.79
TraesCS2B01G079100.1 Wheat plastid 61.33 63.79
Zm00001d052595_P001 Maize plastid 59.67 63.53
TraesCS2A01G067200.1 Wheat plastid 61.33 63.43
TraesCS2A01G067100.1 Wheat plastid 61.33 63.43
TraesCS2A01G066800.1 Wheat plastid 61.33 63.43
TraesCS2D01G065400.1 Wheat plastid 61.33 63.43
TraesCS2D01G065100.2 Wheat plastid 60.77 63.22
CDY42341 Canola plastid 64.64 62.9
TraesCS2A01G067000.1 Wheat plastid 60.77 62.86
GSMUA_Achr8P18400_001 Banana cytosol 8.84 61.54
HORVU2Hr1G010670.1 Barley plastid 62.43 59.47
TraesCS2B01G078900.2 Wheat plastid 60.77 59.46
KRH01757 Soybean plastid 49.17 59.33
KRG99964 Soybean plastid 32.6 59.0
TraesCS2A01G066900.1 Wheat plastid 61.88 58.33
TraesCS2B01G079500.1 Wheat plastid 61.88 58.03
KRG99965 Soybean plastid 41.99 58.02
CDY12612 Canola cytosol 38.12 57.02
PGSC0003DMT400010489 Potato plastid 48.07 51.48
Os12t0291200-00 Rice plastid 27.07 51.04
HORVU5Hr1G050990.4 Barley plastid 53.04 50.0
KRH15458 Soybean plastid 40.88 46.54
HORVU7Hr1G048050.2 Barley plastid 19.89 40.91
Protein Annotations
KEGG:00630+4.1.1.39KEGG:00710+4.1.1.39MapMan:1.2.1.1.2EntrezGene:102577450Gene3D:3.30.190.10ProteinID:ABY21253
ProteinID:ABY21253.1ProteinID:ABY21254ProteinID:ABY21254.1ProteinID:ABY21255ProteinID:ABY21255.1ProteinID:AFW90575
ProteinID:AFW90575.1ProteinID:CAA49413ProteinID:CAA49413.1EMBL:EU294360EMBL:EU294361EMBL:EU294362
GO:GO:0003674GO:GO:0003824GO:GO:0004497GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507
GO:GO:0009536GO:GO:0009853GO:GO:0009987GO:GO:0015977GO:GO:0015979GO:GO:0016491
GO:GO:0016829GO:GO:0016984GO:GO:0019253GO:GO:0055114InterPro:IPR036385EMBL:JX576219
UniProt:M1BQ74PFAM:PF00101PFAM:PF12338EnsemblPlantsGene:PGSC0003DMG400019584PGSC:PGSC0003DMG400019584EnsemblPlants:PGSC0003DMT400050381
PRINTS:PR00152PANTHER:PTHR31262PANTHER:PTHR31262:SF0InterPro:RuBisCO_scInterPro:RuBisCO_sc_domInterPro:RuBisCO_ssu_N
InterPro:RuBisCO_ssu_sfSMART:SM00961SUPFAM:SSF55239UniParc:UPI000294B204EMBL:X69759RefSeq:XP_006358055.1
SEG:seg:::::
Description
Ribulose bisphosphate carboxylase small chain 1, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400019584]
Coordinates
chr3:+:4728911..4731136
Molecular Weight (calculated)
20576.6 Da
IEP (calculated)
7.810
GRAVY (calculated)
-0.272
Length
181 amino acids
Sequence
(BLAST)
001: MASSVISSAA VATRTNVTQA SSMVAPFTGL KSTPTFPVSR KQNLDITSIA SNGGRVRCMQ VWPPINMKKY ETLSYLPDLT DEQLLKEVEY LLKNGWVPCL
101: EFETEHGFVY RENNKSPGYY DGRYWTMWKL PMFGCTDATQ VLAEVQECKN AYPQAWIRII GFDNVRQVQC ISFIAYKPEG Y
Best Arabidopsis Sequence Match ( AT5G38410.1 )
(BLAST)
001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A
Arabidopsis Description
Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.