Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G67090.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT1G67090.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034029.1-P | Field mustard | plastid | 93.37 | 93.37 |
| CDY42337 | Canola | plastid | 93.37 | 93.37 |
| CDY12613 | Canola | plastid | 92.82 | 92.82 |
| CDY12616 | Canola | plastid | 88.4 | 88.4 |
| CDX67402 | Canola | plastid | 85.64 | 85.64 |
| AT1G67090.1 | Thale cress | plastid | 84.53 | 85.0 |
| CDY67657 | Canola | plastid | 83.98 | 83.98 |
| CDY52468 | Canola | plastid | 83.98 | 83.98 |
| CDY71122 | Canola | plastid | 82.87 | 82.87 |
| CDY42341 | Canola | plastid | 85.08 | 82.8 |
| CDY01671 | Canola | plastid | 82.32 | 82.32 |
| CDX74532 | Canola | plastid | 82.32 | 82.32 |
| CDX74525 | Canola | plastid | 81.77 | 81.77 |
| CDY01665 | Canola | plastid | 80.66 | 80.66 |
| CDX99682 | Canola | plastid | 82.87 | 79.37 |
| GSMUA_Achr8P18400_001 | Banana | cytosol | 11.05 | 76.92 |
| GSMUA_Achr10P... | Banana | plasma membrane | 62.43 | 71.52 |
| CDY12612 | Canola | cytosol | 47.51 | 71.07 |
| GSMUA_Achr2P22730_001 | Banana | unclear | 61.88 | 70.89 |
| GSMUA_Achr6P09710_001 | Banana | plastid | 60.77 | 69.62 |
| PGSC0003DMT400067905 | Potato | plastid | 60.77 | 69.18 |
| PGSC0003DMT400032975 | Potato | mitochondrion, plastid | 65.75 | 66.11 |
| PGSC0003DMT400062138 | Potato | cytosol, plastid | 65.75 | 65.75 |
| Solyc03g034220.2.1 | Tomato | plastid | 65.19 | 65.56 |
| PGSC0003DMT400050381 | Potato | cytosol, extracellular, plastid | 65.19 | 65.19 |
| Solyc02g085950.2.1 | Tomato | extracellular | 64.64 | 65.0 |
| Solyc02g063150.2.1 | Tomato | nucleus, plastid | 64.64 | 64.64 |
| VIT_17s0000g03690.t01 | Wine grape | plastid | 64.09 | 64.44 |
| Os12t0291400-01 | Rice | plastid | 60.22 | 62.29 |
| Os12t0291100-01 | Rice | plastid | 60.22 | 62.29 |
| Os12t0274700-01 | Rice | plastid | 60.22 | 62.29 |
| TraesCS2A01G067200.1 | Wheat | plastid | 59.67 | 61.71 |
| Os12t0292400-01 | Rice | extracellular | 59.67 | 61.71 |
| HORVU1Hr1G035720.2 | Barley | plastid | 59.67 | 61.36 |
| HORVU5Hr1G051010.2 | Barley | plastid | 59.12 | 61.14 |
| HORVU5Hr1G038630.1 | Barley | plastid | 59.12 | 61.14 |
| HORVU5Hr1G033540.2 | Barley | plastid | 59.12 | 61.14 |
| HORVU2Hr1G010690.1 | Barley | plastid | 59.12 | 61.14 |
| HORVU2Hr1G010630.1 | Barley | plastid | 59.12 | 61.14 |
| TraesCS2B01G079300.1 | Wheat | plastid | 58.56 | 60.92 |
| TraesCS2D01G065300.1 | Wheat | plastid | 58.56 | 60.92 |
| TraesCS2A01G066700.1 | Wheat | plastid | 58.56 | 60.92 |
| TraesCS2D01G065500.1 | Wheat | plastid | 55.25 | 60.61 |
| TraesCS2B01G079200.1 | Wheat | plastid | 58.56 | 60.57 |
| TraesCS2D01G065600.1 | Wheat | plastid | 58.56 | 60.57 |
| TraesCS2B01G079400.1 | Wheat | plastid | 58.56 | 60.57 |
| TraesCS2A01G067300.1 | Wheat | plastid | 58.56 | 60.57 |
| TraesCS2D01G065200.1 | Wheat | plastid | 58.56 | 60.57 |
| TraesCS5B01G162800.1 | Wheat | plastid | 58.56 | 60.57 |
| TraesCS5A01G165400.2 | Wheat | plastid | 58.56 | 60.57 |
| TraesCS5A01G165700.1 | Wheat | plastid | 58.56 | 60.57 |
| TraesCS5B01G162600.1 | Wheat | plastid | 58.56 | 60.57 |
| TraesCS5D01G169600.2 | Wheat | plastid | 58.56 | 60.57 |
| TraesCS5D01G169900.2 | Wheat | plastid | 58.56 | 60.57 |
| TraesCS2B01G079100.1 | Wheat | plastid | 58.01 | 60.34 |
| TraesCS2A01G067100.1 | Wheat | plastid | 58.01 | 60.0 |
| TraesCS2A01G066800.1 | Wheat | plastid | 58.01 | 60.0 |
| KRH46925 | Soybean | plastid | 29.83 | 60.0 |
| Zm00001d004894_P001 | Maize | plastid | 56.35 | 60.0 |
| TraesCS2D01G065400.1 | Wheat | plastid | 58.01 | 60.0 |
| TraesCS2D01G065100.2 | Wheat | plastid | 57.46 | 59.77 |
| EES09292 | Sorghum | plastid | 55.8 | 59.76 |
| TraesCS2A01G067000.1 | Wheat | plastid | 56.91 | 58.86 |
| Zm00001d052595_P001 | Maize | plastid | 55.25 | 58.82 |
| TraesCS2B01G078900.2 | Wheat | plastid | 58.01 | 56.76 |
| HORVU2Hr1G010670.1 | Barley | plastid | 59.12 | 56.32 |
| TraesCS2A01G066900.1 | Wheat | plastid | 58.56 | 55.21 |
| TraesCS2B01G079500.1 | Wheat | plastid | 58.56 | 54.92 |
| KRH01757 | Soybean | plastid | 44.75 | 54.0 |
| KRG99964 | Soybean | plastid | 27.07 | 49.0 |
| KRG99965 | Soybean | plastid | 35.36 | 48.85 |
| HORVU5Hr1G050990.4 | Barley | plastid | 50.28 | 47.4 |
| Os12t0291200-00 | Rice | plastid | 24.86 | 46.88 |
| KRH15458 | Soybean | plastid | 34.81 | 39.62 |
| HORVU7Hr1G048050.2 | Barley | plastid | 17.68 | 36.36 |
Protein Annotations
| KEGG:00630+4.1.1.39 | KEGG:00710+4.1.1.39 | MapMan:1.2.1.1.2 | Gene3D:3.30.190.10 | GO:A0A078HZX8 | UniProt:A0A078HZX8 |
| EnsemblPlants:CDY42338 | ProteinID:CDY42338 | ProteinID:CDY42338.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004497 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009853 | GO:GO:0009987 | GO:GO:0015977 | GO:GO:0015979 |
| GO:GO:0016491 | GO:GO:0016829 | GO:GO:0016984 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00074590001 | InterPro:IPR036385 |
| PFAM:PF00101 | PFAM:PF12338 | PRINTS:PR00152 | PANTHER:PTHR31262 | PANTHER:PTHR31262:SF0 | MetaCyc:PWY-5532 |
| MetaCyc:PWY-5723 | InterPro:RuBisCO_sc | InterPro:RuBisCO_sc_dom | InterPro:RuBisCO_ssu_N | InterPro:RuBisCO_ssu_sf | SMART:SM00961 |
| SUPFAM:SSF55239 | UniParc:UPI0004EE85EE | : | : | : | : |
Description
BnaC02g17150DRibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A078HZX8]
Coordinates
chrLK032521:-:133055..134146
Molecular Weight (calculated)
20378.5 Da
IEP (calculated)
7.784
GRAVY (calculated)
-0.157
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVRLSSAT MTSSLAHATM VAPFIGLKSS AAFPVTCKAN TEITSITSNG GRINCMKVWP PVGKKKFETL SYLPGLTDVE IAKEIDYLIR NKWTPCIEFE
101: VEHGFVYREH GNIPGYYDGR YWTMWKLPLF GCTDPAQVLK EVEECKQEYP NAFIRIIGFD NNRQAQCISF IAYKPPSFTD A
101: VEHGFVYREH GNIPGYYDGR YWTMWKLPLF GCTDPAQVLK EVEECKQEYP NAFIRIIGFD NNRQAQCISF IAYKPPSFTD A
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
Arabidopsis Description
RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.