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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 17189339
plasma membrane: 18557835
nucleus: 19621931
plastid: 21433289
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 17189339 doi
T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky
Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0621300-01
Os01t0915400-00
Os01t0948900-01
Os02t0258300-01
Os02t0489550-00
Os02t0708400-01
Os03t0673000-00
Os03t0673500-00
Os03t0727000-02
Os03t0727200-00
Os03t0771500-01
Os03t0772100-00
Os04t0627000-02
Os05t0586400-01
Os06t0524300-01
Os07t0129700-01
Os08t0136100-01
Os08t0187500-01
Os08t0428400-01
Os08t0520900-00
Os10t0362300-03
Os11t0141900-00
Os12t0138500-01
Os12t0538300-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G67090.1 Os10t0362300-03 AT5G35750.1 18642946
AT5G38420.1 Os01t0621300-01 AT1G01440.1 21798944
AT5G38420.1 Os02t0258300-01 AT1G01440.1 21798944
AT5G38420.1 Os05t0586400-01 AT1G01440.1 21798944
AT5G38420.1 Os06t0524300-01 AT1G01440.1 21798944
AT5G38420.1 Os01t0948900-01 AT2G41370.1 21798944
AT5G38420.1 Os11t0141900-00 AT2G41370.1 21798944
AT5G38420.1 Os12t0138500-01 AT2G41370.1 21798944
AT5G38420.1 Os01t0915400-00 AT3G04240.1 21798944
AT5G38420.1 Os02t0489550-00 AT3G04240.1 21798944
AT5G38420.1 Os08t0428400-01 AT3G17860.1 21798944
AT5G38420.1 Os02t0708400-01 AT3G27960.1 21798944
AT5G38420.1 Os04t0627000-02 AT4G04890.1 21798944
AT5G38420.1 Os08t0136100-01 AT4G04890.1 21798944
AT5G38420.1 Os08t0187500-01 AT4G04890.1 21798944
AT5G38420.1 Os03t0673000-00 AT4G08150.1 21798944
AT5G38420.1 Os03t0673500-00 AT4G08150.1 21798944
AT5G38420.1 Os03t0727000-02 AT4G08150.1 21798944
AT5G38420.1 Os03t0727200-00 AT4G08150.1 21798944
AT5G38420.1 Os03t0771500-01 AT4G08150.1 21798944
AT5G38420.1 Os03t0772100-00 AT4G08150.1 21798944
AT5G38420.1 Os07t0129700-01 AT4G08150.1 21798944
AT5G38420.1 Os12t0538300-01 AT5G11980.1 21798944
AT5G38430.1 Os08t0520900-00 AT2G39930.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os12t0292400-01 Rice extracellular 97.14 97.14
Os12t0291100-01 Rice plastid 96.0 96.0
Os12t0291400-01 Rice plastid 93.71 93.71
TraesCS2A01G066700.1 Wheat plastid 82.29 82.76
TraesCS2B01G079100.1 Wheat plastid 82.29 82.76
TraesCS2D01G065300.1 Wheat plastid 82.29 82.76
HORVU2Hr1G010630.1 Barley plastid 82.29 82.29
HORVU2Hr1G010690.1 Barley plastid 82.29 82.29
HORVU5Hr1G038630.1 Barley plastid 82.29 82.29
HORVU5Hr1G051010.2 Barley plastid 82.29 82.29
TraesCS2B01G079300.1 Wheat plastid 81.71 82.18
TraesCS2D01G065100.2 Wheat plastid 81.71 82.18
TraesCS5B01G162600.1 Wheat plastid 81.71 81.71
TraesCS5A01G165700.1 Wheat plastid 81.71 81.71
TraesCS5A01G165400.2 Wheat plastid 81.71 81.71
TraesCS2D01G065600.1 Wheat plastid 81.71 81.71
HORVU5Hr1G033540.2 Barley plastid 81.71 81.71
TraesCS5D01G169900.2 Wheat plastid 81.71 81.71
TraesCS5D01G169600.2 Wheat plastid 81.71 81.71
TraesCS5B01G162800.1 Wheat plastid 81.71 81.71
TraesCS2B01G079400.1 Wheat plastid 81.71 81.71
TraesCS2A01G067300.1 Wheat plastid 81.71 81.71
TraesCS2D01G065500.1 Wheat plastid 76.57 81.21
TraesCS2A01G067200.1 Wheat plastid 81.14 81.14
TraesCS2D01G065200.1 Wheat plastid 81.14 81.14
TraesCS2D01G065400.1 Wheat plastid 81.14 81.14
TraesCS2B01G079200.1 Wheat plastid 80.57 80.57
TraesCS2A01G067000.1 Wheat plastid 80.57 80.57
TraesCS2A01G067100.1 Wheat plastid 80.57 80.57
Zm00001d004894_P001 Maize plastid 77.71 80.0
TraesCS2A01G066800.1 Wheat plastid 80.0 80.0
HORVU1Hr1G035720.2 Barley plastid 80.0 79.55
Zm00001d052595_P001 Maize plastid 76.57 78.82
EES09292 Sorghum plastid 75.43 78.11
GSMUA_Achr6P09710_001 Banana plastid 69.71 77.22
GSMUA_Achr8P18400_001 Banana cytosol 11.43 76.92
HORVU2Hr1G010670.1 Barley plastid 82.29 75.79
TraesCS2A01G066900.1 Wheat plastid 82.29 75.0
GSMUA_Achr2P22730_001 Banana unclear 67.43 74.68
TraesCS2B01G078900.2 Wheat plastid 78.86 74.59
TraesCS2B01G079500.1 Wheat plastid 81.71 74.09
GSMUA_Achr10P... Banana plasma membrane 66.86 74.05
PGSC0003DMT400067905 Potato plastid 65.71 72.33
PGSC0003DMT400032975 Potato mitochondrion, plastid 70.29 68.33
Solyc02g085950.2.1 Tomato extracellular 69.14 67.22
KRH18247 Soybean nucleus, plastid 68.0 66.85
KRG93871 Soybean plastid 68.0 66.85
KRG93867 Soybean plastid 68.0 66.85
Solyc03g034220.2.1 Tomato plastid 68.0 66.11
Solyc02g063150.2.1 Tomato nucleus, plastid 68.0 65.75
PGSC0003DMT400050381 Potato cytosol, extracellular, plastid 68.0 65.75
Os12t0291200-00 Rice plastid 36.0 65.62
Bra028181.1-P Field mustard plastid 59.43 64.2
PGSC0003DMT400062138 Potato cytosol, plastid 66.29 64.09
AT1G67090.1 Thale cress plastid 64.57 62.78
AT5G38430.1 Thale cress plastid 64.57 62.43
AT5G38420.1 Thale cress plastid 64.57 62.43
HORVU5Hr1G050990.4 Barley plastid 67.43 61.46
Bra028174.1-P Field mustard plastid 63.43 61.33
CDY01665 Canola plastid 63.43 61.33
CDY52468 Canola plastid 63.43 61.33
CDY71122 Canola plastid 63.43 61.33
AT5G38410.3 Thale cress plastid 65.14 61.29
CDX67402 Canola plastid 62.86 60.77
CDY01671 Canola plastid 62.86 60.77
CDX74532 Canola plastid 62.86 60.77
CDX74525 Canola plastid 62.86 60.77
CDY67657 Canola plastid 62.86 60.77
Bra025431.1-P Field mustard plastid 62.86 60.77
VIT_17s0000g03690.t01 Wine grape plastid 62.29 60.56
CDY42338 Canola plastid 62.29 60.22
Bra028406.1-P Field mustard plastid 62.29 60.22
Bra034027.1-P Field mustard plastid 61.14 59.12
Bra034029.1-P Field mustard plastid 61.14 59.12
CDY12613 Canola plastid 61.14 59.12
CDX99682 Canola plastid 63.43 58.73
KRG93872 Soybean plastid 45.14 58.52
CDY12612 Canola cytosol 40.0 57.85
CDY12616 Canola plastid 58.86 56.91
Bra034024.1-P Field mustard plastid 58.86 56.91
CDY42337 Canola plastid 58.86 56.91
KRH01757 Soybean plastid 46.29 54.0
KRH46925 Soybean plastid 27.43 53.33
CDY42341 Canola plastid 56.0 52.69
KRG93873 Soybean plastid 30.86 51.43
KRG99965 Soybean plastid 36.57 48.85
HORVU7Hr1G048050.2 Barley plastid 23.43 46.59
KRG99964 Soybean plastid 26.29 46.0
Os02t0152400-01 Rice plastid 44.0 42.08
KRH15458 Soybean plastid 33.14 36.48
Protein Annotations
KEGG:00630+4.1.1.39KEGG:00710+4.1.1.39MapMan:1.2.1.1.2PDB:1WDDGene3D:3.30.190.10PDB:3AXK
PDB:3AXMEntrezGene:4351966ProteinID:ABA97056.1EMBL:AF052305EMBL:AK061611EMBL:AK119219
EMBL:AK121444ProteinID:BAF29578.1ProteinID:BAT16666.1ProteinID:CAA30393.1EMBL:D00643ProteinID:EAZ33426.1
ProteinID:EEE62884.1GO:GO:0003674GO:GO:0003824GO:GO:0004497GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009507GO:GO:0009536GO:GO:0009853GO:GO:0009987GO:GO:0015977GO:GO:0015979
GO:GO:0016491GO:GO:0016829GO:GO:0016984GO:GO:0019253GO:GO:0055114InterPro:IPR036385
EnsemblPlantsGene:Os12g0274700EnsemblPlants:Os12t0274700-01PFAM:PF00101PFAM:PF12338PRINTS:PR00152PANTHER:PTHR31262
PANTHER:PTHR31262:SF0UniProt:Q0INY7InterPro:RuBisCO_scInterPro:RuBisCO_sc_domInterPro:RuBisCO_ssu_NInterPro:RuBisCO_ssu_sf
SMART:SM00961SUPFAM:SSF55239UniParc:UPI00001333C4RefSeq:XP_015619872.1SEG:seg:
Description
RUBISCO SMALL SUBUNITSimilar to Petunia ribulose 1,5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51), partial cds. (Fragment). (Os12t0274700-01);Similar to Petunia ribulose 1,5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51), partial cds. (Fragment). (Os12t0274700-02)
Coordinates
chr12:-:10080505..10081588
Molecular Weight (calculated)
19647.7 Da
IEP (calculated)
9.125
GRAVY (calculated)
-0.221
Length
175 amino acids
Sequence
(BLAST)
001: MAPSVMASSA TTVAPFQGLK STAGMPVARR SGNSSFGNVS NGGRIRCMQV WPIEGIKKFE TLSYLPPLTV EDLLKQIEYL LRSKWVPCLE FSKVGFVYRE
101: NHRSPGYYDG RYWTMWKLPM FGCTDATQVL KELEEAKKAY PDAFVRIIGF DNVRQVQLIS FIAYKPPGCE ESGGN
Best Arabidopsis Sequence Match ( AT1G67090.1 )
(BLAST)
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
Arabidopsis Description
RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.