Factsheet for AT5G38410.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G38420.1	Thale cress	plastid	94.09	96.69
AT5G38430.1	Thale cress	plastid	94.09	96.69
CDY52468	Canola	plastid	91.4	93.92
Bra028174.1-P	Field mustard	plastid	90.86	93.37
CDY71122	Canola	plastid	90.86	93.37
CDX67402	Canola	plastid	90.86	93.37
Bra025431.1-P	Field mustard	plastid	90.32	92.82
Bra028406.1-P	Field mustard	plastid	90.32	92.82
CDY01671	Canola	plastid	89.78	92.27
CDY67657	Canola	plastid	89.78	92.27
CDX74532	Canola	plastid	89.78	92.27
CDY01665	Canola	plastid	89.25	91.71
CDX74525	Canola	plastid	89.25	91.71
Bra028181.1-P	Field mustard	plastid	79.57	91.36
AT1G67090.1	Thale cress	plastid	88.17	91.11
CDX99682	Canola	plastid	90.32	88.89
PGSC0003DMT400067905	Potato	plastid	66.13	77.36
GSMUA_Achr8P18400_001	Banana	cytosol	10.75	76.92
PGSC0003DMT400032975	Potato	mitochondrion, plastid	73.66	76.11
GSMUA_Achr10P...	Banana	plasma membrane	63.98	75.32
GSMUA_Achr2P22730_001	Banana	unclear	63.98	75.32
PGSC0003DMT400062138	Potato	cytosol, plastid	72.58	74.59
Solyc03g034220.2.1	Tomato	plastid	72.04	74.44
Solyc02g085950.2.1	Tomato	extracellular	72.04	74.44
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	71.51	73.48
GSMUA_Achr6P09710_001	Banana	plastid	62.37	73.42
KRH46925	Soybean	plastid	35.48	73.33
Solyc02g063150.2.1	Tomato	nucleus, plastid	70.43	72.38
VIT_17s0000g03690.t01	Wine grape	plastid	69.35	71.67
Os12t0291400-01	Rice	plastid	61.29	65.14
Os12t0291100-01	Rice	plastid	61.29	65.14
Os12t0274700-01	Rice	plastid	61.29	65.14
HORVU1Hr1G035720.2	Barley	plastid	61.29	64.77
HORVU5Hr1G033540.2	Barley	plastid	60.75	64.57
HORVU2Hr1G010630.1	Barley	plastid	60.75	64.57
Os12t0292400-01	Rice	extracellular	60.75	64.57
HORVU5Hr1G051010.2	Barley	plastid	60.75	64.57
HORVU5Hr1G038630.1	Barley	plastid	60.75	64.57
HORVU2Hr1G010690.1	Barley	plastid	60.75	64.57
TraesCS2A01G066700.1	Wheat	plastid	60.22	64.37
TraesCS2D01G065300.1	Wheat	plastid	60.22	64.37
TraesCS2B01G079300.1	Wheat	plastid	60.22	64.37
TraesCS2D01G065600.1	Wheat	plastid	60.22	64.0
TraesCS2A01G067300.1	Wheat	plastid	60.22	64.0
TraesCS2B01G079200.1	Wheat	plastid	60.22	64.0
TraesCS2B01G079400.1	Wheat	plastid	60.22	64.0
TraesCS2D01G065200.1	Wheat	plastid	60.22	64.0
TraesCS5A01G165400.2	Wheat	plastid	60.22	64.0
TraesCS5A01G165700.1	Wheat	plastid	60.22	64.0
TraesCS5B01G162600.1	Wheat	plastid	60.22	64.0
TraesCS5B01G162800.1	Wheat	plastid	60.22	64.0
TraesCS5D01G169600.2	Wheat	plastid	60.22	64.0
TraesCS5D01G169900.2	Wheat	plastid	60.22	64.0
TraesCS2B01G079100.1	Wheat	plastid	59.68	63.79
TraesCS2D01G065500.1	Wheat	plastid	56.45	63.64
Zm00001d004894_P001	Maize	plastid	58.06	63.53
TraesCS2A01G066800.1	Wheat	plastid	59.68	63.43
TraesCS2A01G067100.1	Wheat	plastid	59.68	63.43
TraesCS2A01G067200.1	Wheat	plastid	59.68	63.43
TraesCS2D01G065400.1	Wheat	plastid	59.68	63.43
TraesCS2D01G065100.2	Wheat	plastid	59.14	63.22
Zm00001d052595_P001	Maize	plastid	57.53	62.94
TraesCS2A01G067000.1	Wheat	plastid	58.6	62.29
KRH01757	Soybean	plastid	50.0	62.0
EES09292	Sorghum	plastid	55.38	60.95
KRG99964	Soybean	plastid	32.26	60.0
HORVU2Hr1G010670.1	Barley	plastid	60.75	59.47
TraesCS2B01G078900.2	Wheat	plastid	59.14	59.46
TraesCS2A01G066900.1	Wheat	plastid	60.22	58.33
TraesCS2B01G079500.1	Wheat	plastid	60.22	58.03
KRG99965	Soybean	plastid	39.78	56.49
HORVU5Hr1G050990.4	Barley	plastid	50.54	48.96
Os12t0291200-00	Rice	plastid	24.73	47.92
KRH15458	Soybean	plastid	40.32	47.17
HORVU7Hr1G048050.2	Barley	plastid	18.28	38.64

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	EntrezGene:833828	ProteinID:AED94313.1
ArrayExpress:AT5G38410	EnsemblPlantsGene:AT5G38410	RefSeq:AT5G38410	TAIR:AT5G38410	RefSeq:AT5G38410-TAIR-G	EnsemblPlants:AT5G38410.3
TAIR:AT5G38410.3	UniProt:B3H5S2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009628	GO:GO:0009637	GO:GO:0009853	GO:GO:0009941	GO:GO:0009987
GO:GO:0010114	GO:GO:0010218	GO:GO:0015977	GO:GO:0015979	GO:GO:0016020	GO:GO:0016043
GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0022626	GO:GO:0030312	GO:GO:0048046
GO:GO:0055114	GO:GO:0080158	GO:GO:0110102	InterPro:IPR036385	RefSeq:NP_001119331.1	PFAM:PF00101
PFAM:PF12338	PO:PO:0000039	PO:PO:0000223	PO:PO:0000282	PO:PO:0000293	PO:PO:0005020
PO:PO:0005645	PO:PO:0006339	PO:PO:0007131	PO:PO:0009001	PO:PO:0009025	PO:PO:0009031
PO:PO:0009032	PO:PO:0020030	PO:PO:0020100	PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0
InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N	InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239
UniParc:UPI000173954A	SEG:seg	:	:	:	:

Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]

Coordinates

chr5:-:15376988..15378416

Molecular Weight (calculated)

20841.1 Da

IEP (calculated)

8.452

GRAVY (calculated)

-0.172

Length

186 amino acids

Sequence
(BLAST)

001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEVINTKHGF VYREHGNTPG YYDGRYWTMW KLPLFGCTDS AQVLKEVEEC KKEYPGAFIR IIGFDNTRQV QCISFIAYKP PSFTEA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.