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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 16667159
plastid: 15069638
plastid: 15276442
plastid: 21433289
plasma membrane: 27800704
gfp PMID: 16667159 doi
M Hahn, V Walbot
Department of Biological Sciences, Stanford University, Stanford, California 94305-5020.
msms PMID: 15276442 doi
BK Kristensen, P Askerlund, NV Bykova, H Egsgaard, IM Møller
Risø National Laboratory, Plant Research Department, P.O. Box 49, DK-4000 Roskilde, Denmark.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 15069638 doi
N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0621300-01
Os01t0915400-00
Os01t0948900-01
Os02t0258300-01
Os02t0489550-00
Os02t0708400-01
Os03t0673000-00
Os03t0673500-00
Os03t0727000-02
Os03t0727200-00
Os03t0771500-01
Os03t0772100-00
Os04t0627000-02
Os05t0586400-01
Os06t0524300-01
Os07t0129700-01
Os08t0136100-01
Os08t0187500-01
Os08t0428400-01
Os08t0520900-00
Os10t0362300-03
Os11t0141900-00
Os12t0138500-01
Os12t0538300-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G67090.1 Os10t0362300-03 AT5G35750.1 18642946
AT5G38420.1 Os01t0621300-01 AT1G01440.1 21798944
AT5G38420.1 Os02t0258300-01 AT1G01440.1 21798944
AT5G38420.1 Os05t0586400-01 AT1G01440.1 21798944
AT5G38420.1 Os06t0524300-01 AT1G01440.1 21798944
AT5G38420.1 Os01t0948900-01 AT2G41370.1 21798944
AT5G38420.1 Os11t0141900-00 AT2G41370.1 21798944
AT5G38420.1 Os12t0138500-01 AT2G41370.1 21798944
AT5G38420.1 Os01t0915400-00 AT3G04240.1 21798944
AT5G38420.1 Os02t0489550-00 AT3G04240.1 21798944
AT5G38420.1 Os08t0428400-01 AT3G17860.1 21798944
AT5G38420.1 Os02t0708400-01 AT3G27960.1 21798944
AT5G38420.1 Os04t0627000-02 AT4G04890.1 21798944
AT5G38420.1 Os08t0136100-01 AT4G04890.1 21798944
AT5G38420.1 Os08t0187500-01 AT4G04890.1 21798944
AT5G38420.1 Os03t0673000-00 AT4G08150.1 21798944
AT5G38420.1 Os03t0673500-00 AT4G08150.1 21798944
AT5G38420.1 Os03t0727000-02 AT4G08150.1 21798944
AT5G38420.1 Os03t0727200-00 AT4G08150.1 21798944
AT5G38420.1 Os03t0771500-01 AT4G08150.1 21798944
AT5G38420.1 Os03t0772100-00 AT4G08150.1 21798944
AT5G38420.1 Os07t0129700-01 AT4G08150.1 21798944
AT5G38420.1 Os12t0538300-01 AT5G11980.1 21798944
AT5G38430.1 Os08t0520900-00 AT2G39930.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os12t0292400-01 Rice extracellular 96.57 96.57
Os12t0291400-01 Rice plastid 96.57 96.57
Os12t0274700-01 Rice plastid 96.0 96.0
HORVU5Hr1G051010.2 Barley plastid 83.43 83.43
HORVU5Hr1G038630.1 Barley plastid 83.43 83.43
TraesCS2D01G065200.1 Wheat plastid 83.43 83.43
TraesCS5A01G165400.2 Wheat plastid 82.86 82.86
TraesCS2B01G079200.1 Wheat plastid 82.86 82.86
HORVU5Hr1G033540.2 Barley plastid 82.86 82.86
TraesCS5A01G165700.1 Wheat plastid 82.86 82.86
TraesCS5B01G162600.1 Wheat plastid 82.86 82.86
TraesCS5B01G162800.1 Wheat plastid 82.86 82.86
TraesCS5D01G169600.2 Wheat plastid 82.86 82.86
TraesCS5D01G169900.2 Wheat plastid 82.86 82.86
TraesCS2A01G066800.1 Wheat plastid 82.29 82.29
HORVU2Hr1G010630.1 Barley plastid 82.29 82.29
HORVU2Hr1G010690.1 Barley plastid 82.29 82.29
TraesCS2D01G065300.1 Wheat plastid 81.71 82.18
TraesCS2A01G066700.1 Wheat plastid 81.71 82.18
TraesCS2B01G079100.1 Wheat plastid 81.71 82.18
TraesCS2D01G065600.1 Wheat plastid 81.71 81.71
TraesCS2A01G067300.1 Wheat plastid 81.71 81.71
TraesCS2B01G079400.1 Wheat plastid 81.71 81.71
TraesCS2D01G065100.2 Wheat plastid 81.14 81.61
HORVU1Hr1G035720.2 Barley plastid 81.71 81.25
TraesCS2D01G065500.1 Wheat plastid 76.57 81.21
TraesCS2A01G067200.1 Wheat plastid 81.14 81.14
TraesCS2A01G067100.1 Wheat plastid 81.14 81.14
TraesCS2D01G065400.1 Wheat plastid 81.14 81.14
TraesCS2B01G079300.1 Wheat plastid 80.57 81.03
TraesCS2A01G067000.1 Wheat plastid 80.57 80.57
Zm00001d004894_P001 Maize plastid 77.14 79.41
Zm00001d052595_P001 Maize plastid 76.0 78.24
EES09292 Sorghum plastid 74.86 77.51
GSMUA_Achr6P09710_001 Banana plastid 69.71 77.22
GSMUA_Achr8P18400_001 Banana cytosol 11.43 76.92
HORVU2Hr1G010670.1 Barley plastid 82.29 75.79
GSMUA_Achr2P22730_001 Banana unclear 67.43 74.68
TraesCS2A01G066900.1 Wheat plastid 81.71 74.48
TraesCS2B01G079500.1 Wheat plastid 81.71 74.09
TraesCS2B01G078900.2 Wheat plastid 78.29 74.05
GSMUA_Achr10P... Banana plasma membrane 66.86 74.05
PGSC0003DMT400067905 Potato plastid 65.71 72.33
Os12t0291200-00 Rice plastid 39.43 71.88
PGSC0003DMT400032975 Potato mitochondrion, plastid 69.71 67.78
Solyc02g085950.2.1 Tomato extracellular 69.14 67.22
KRG93871 Soybean plastid 68.0 66.85
KRG93867 Soybean plastid 68.0 66.85
KRH18247 Soybean nucleus, plastid 68.0 66.85
Solyc03g034220.2.1 Tomato plastid 67.43 65.56
PGSC0003DMT400050381 Potato cytosol, extracellular, plastid 67.43 65.19
Solyc02g063150.2.1 Tomato nucleus, plastid 66.86 64.64
Bra028181.1-P Field mustard plastid 59.43 64.2
PGSC0003DMT400062138 Potato cytosol, plastid 65.14 62.98
HORVU5Hr1G050990.4 Barley plastid 68.57 62.5
AT1G67090.1 Thale cress plastid 64.0 62.22
AT5G38430.1 Thale cress plastid 64.0 61.88
AT5G38420.1 Thale cress plastid 64.0 61.88
AT5G38410.3 Thale cress plastid 65.14 61.29
CDY01665 Canola plastid 62.86 60.77
Bra028174.1-P Field mustard plastid 62.86 60.77
CDX67402 Canola plastid 62.86 60.77
CDY52468 Canola plastid 62.86 60.77
CDY71122 Canola plastid 62.86 60.77
CDY67657 Canola plastid 62.86 60.77
Bra025431.1-P Field mustard plastid 62.29 60.22
CDY01671 Canola plastid 62.29 60.22
CDX74532 Canola plastid 62.29 60.22
CDX74525 Canola plastid 62.29 60.22
CDY42338 Canola plastid 62.29 60.22
Bra028406.1-P Field mustard plastid 62.29 60.22
VIT_17s0000g03690.t01 Wine grape plastid 61.14 59.44
Bra034029.1-P Field mustard plastid 61.14 59.12
Bra034027.1-P Field mustard plastid 61.14 59.12
CDY12613 Canola plastid 61.14 59.12
KRG93872 Soybean plastid 45.14 58.52
CDX99682 Canola plastid 62.86 58.2
CDY12612 Canola cytosol 40.0 57.85
Bra034024.1-P Field mustard plastid 58.86 56.91
CDY12616 Canola plastid 58.86 56.91
CDY42337 Canola plastid 58.86 56.91
KRH01757 Soybean plastid 46.29 54.0
KRH46925 Soybean plastid 27.43 53.33
CDY42341 Canola plastid 56.0 52.69
KRG93873 Soybean plastid 31.43 52.38
KRG99965 Soybean plastid 36.57 48.85
KRG99964 Soybean plastid 26.29 46.0
HORVU7Hr1G048050.2 Barley plastid 22.86 45.45
Os02t0152400-01 Rice plastid 44.0 42.08
KRH15458 Soybean plastid 33.14 36.48
Protein Annotations
KEGG:00630+4.1.1.39KEGG:00710+4.1.1.39MapMan:1.2.1.1.2Gene3D:3.30.190.10EntrezGene:4352014EntrezGene:4352021
ProteinID:ABA97169.1ProteinID:ABA97179.1ProteinID:ABA97180.1ProteinID:ABG21974.1ProteinID:ABG21975.1EMBL:AK068266
EMBL:AK070257EMBL:AY445627ProteinID:BAF29623.1ProteinID:BAF29626.1ProteinID:BAT16784.1ProteinID:BAT16793.1
EMBL:D00644ProteinID:EAZ20216.1ProteinID:EEE53069.1UniProt:G8CTM6GO:GO:0003674GO:GO:0003824
GO:GO:0004497GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005975
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009853
GO:GO:0009987GO:GO:0015977GO:GO:0015979GO:GO:0016491GO:GO:0016829GO:GO:0016984
GO:GO:0019253GO:GO:0055114EMBL:HQ324824InterPro:IPR036385EnsemblPlantsGene:Os12g0291100EnsemblPlants:Os12t0291100-01
UniProt:P18566PFAM:PF00101PFAM:PF12338PRINTS:PR00152PANTHER:PTHR31262PANTHER:PTHR31262:SF0
InterPro:RuBisCO_scInterPro:RuBisCO_sc_domInterPro:RuBisCO_ssu_NInterPro:RuBisCO_ssu_sfSMART:SM00961SUPFAM:SSF55239
UniParc:UPI000021FF17RefSeq:XP_015619408.1RefSeq:XP_015620270.1:::
Description
RuBisCO small subunit 3, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 3Similar to Petunia ribulose 1,5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51), partial cds. (Fragment). (Os12t0291100-01);Similar to Ribulose bisphosphate carboxylase small chain. (Os12t0291100-02);Non-protein coding transcript. (Os12t0291100-03)
Coordinates
chr12:+:11262587..11263593
Molecular Weight (calculated)
19631.7 Da
IEP (calculated)
9.120
GRAVY (calculated)
-0.221
Length
175 amino acids
Sequence
(BLAST)
001: MAPTVMASSA TSVAPFQGLK STAGLPVSRR STNSGFGNVS NGGRIKCMQV WPIEGIKKFE TLSYLPPLTV EDLLKQIEYL LRSKWVPCLE FSKVGFVYRE
101: NHRSPGYYDG RYWTMWKLPM FGCTDATQVL KELEEAKKAY PDAFVRIIGF DNVRQVQLIS FIAYKPPGCE ESGGN
Best Arabidopsis Sequence Match ( AT1G67090.1 )
(BLAST)
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
Arabidopsis Description
RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.